<i>Schizosaccharomyces</i> Orthogroup (SOG) Resource: A Web Platform for Exploring Gene Conservation in Fission Yeasts

The fission yeast Schizosaccharomyces pombe is a prominent model organism widely used to investigate fundamental cellular mechanisms. In addition to S. pombe, the genus Schizosaccharomyces includes six other species-S. octosporus, S. japonicus, S. cryophilus, S. osmophilus, S. lindneri, and S. versatilis. These fission yeast species share a common ancestor from which the genus diversified over more than 200 million years. This extensive evolutionary divergence provides opportunities for comparative genomics. Here, we present the Schizosaccharomyces orthogroup (SOG) resource, a web platform developed from our high-quality genome assemblies, gene annotations, and orthology assignments. Most fission yeast genes are assigned to one of over 5,000 orthogroups. The platform enables users to visualize orthogroup sequence alignments and phylogenetic trees, retrieve coding and flanking sequences, and explore the conservation of local synteny. This resource will benefit researchers focusing on individual genes as well as those investigating gene evolution at broader scales. It is freely accessible at https://www.sogweb.org.

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Publication Details

Journal
Yeast
Published
2026-04-22
DOI
https://doi.org/10.1002/yea.70019
Primary Topic
Bioinformatics and Genomic Networks
Type
article
Field-Weighted Citation Impact
0.00

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article

Schizosaccharomyces Orthogroup (SOG) Resource: A Web Platform for Exploring Gene Conservation in Fission Yeasts

Ambre Noly, Tong-Yang Du, Zhang Wen-cai, Dominique Helmlinger et al.
Yeast
Bioinformatics and Genomic Networks
article

Schizosaccharomyces Orthogroup (SOG) Resource: A Web Platform for Exploring Gene Conservation in Fission Yeasts

Ambre Noly, Tong-Yang Du, Zhang Wen-cai, Dominique Helmlinger, Fan-Yi Zhang, Michael Brysch‐Herzberg, Guo‐Song Jia, Yue Liang, Philippe Fort, Fang Suo, Li‐Lin Du, Xiaomin Du, Wen Li, Feng‐Yan Bai, Yu Hua, Heng-Le Li, Qi‐Ming Wang
article en

Abstract

The fission yeast Schizosaccharomyces pombe is a prominent model organism widely used to investigate fundamental cellular mechanisms. In addition to S. pombe, the genus Schizosaccharomyces includes six other species-S. octosporus, S. japonicus, S. cryophilus, S. osmophilus, S. lindneri, and S. versatilis. These fission yeast species share a common ancestor from which the genus diversified over more than 200 million years. This extensive evolutionary divergence provides opportunities for comparative genomics. Here, we present the Schizosaccharomyces orthogroup (SOG) resource, a web platform developed from our high-quality genome assemblies, gene annotations, and orthology assignments. Most fission yeast genes are assigned to one of over 5,000 orthogroups. The platform enables users to visualize orthogroup sequence alignments and phylogenetic trees, retrieve coding and flanking sequences, and explore the conservation of local synteny. This resource will benefit researchers focusing on individual genes as well as those investigating gene evolution at broader scales. It is freely accessible at https://www.sogweb.org.

YeastVol. 43(3)
Centre National de la Recherche Scientifique (FR), Université de Montpellier (FR), Chinese Academy of Medical Sciences & Peking Union Medical College (CN), Peking Union Medical College Hospital (CN), Edinburgh College (GB), Heilbronn University (DE), National Institute of Biological Sciences, Beijing (CN), Institute of Mechanics (CN), Zhejiang University-University of Edinburgh Institute (CN), Hebei University (CN), University of Edinburgh (GB), Tsinghua University (CN)
National Natural Science Foundation of China, National Key Research and Development Program of China
Life in Land
Openalex Percentile: Top 21%
Bioinformatics and Genomic Networks
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