A model of multi-view contrastive hypergraph learning for predicting circRNA-disease associations

In recent years, circRNAs have been found to be closely related to a variety of human diseases. In-depth exploration of their potential associations with diseases is of great value for understanding disease mechanisms and auxiliary diagnosis. To address the association between circRNAs and human diseases, this paper proposes a multi-view contrastive learning model MCHG that integrates attention mechanism and hypergraph structure modeling. The model first constructs a multi-view hypergraph structure based on the circRNA-disease heterogeneous network to capture high-order relationships between nodes. Subsequently, a hypergraph convolutional network is used to extract structured features from different perspectives, and an improved contrastive learning strategy is used to enhance the discriminative ability of feature representation. Furthermore, the model improves the convolutional block attention model, weighting features from two dimensions: channel and space, highlighting key information and suppressing redundant interference. The fused multi-view representations are input into the neural network projection module to achieve efficient prediction of potential associations by reconstructing the circRNA-disease association matrix. Validation experiments on the CircR2Disease dataset show that MCHG achieves an AUC of 0.9394 and an AUPR of 0.9602. Compared with previous models, MCHG can simultaneously model the high-order structural relationships and multi-perspective complementary information in the circRNA-disease heterogeneous network. Furthermore, it improves the quality of feature representation through improved contrastive learning and a two-dimensional attention weighting mechanism, thereby enhancing the accuracy and robustness of potential association prediction. In addition, among the top 25 unknown CDAs predicted by MCHG, 23 were confirmed by relevant literature, indicating that MCHG can effectively predict potential CDAs and provide assistance for further biological wet experiments.

Authors

Institutions

Publication Details

Journal
Scientific Reports
Published
2026-04-22
DOI
https://doi.org/10.1038/s41598-026-49139-1
Primary Topic
Circular RNAs in diseases
Type
article
Field-Weighted Citation Impact
0.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

A model of multi-view contrastive hypergraph learning for predicting circRNA-disease associations

Xiujuan Ma, Cheng-Wei Ruan, Lei Wang, Jiaqi Liu et al.
Scientific Reports
Circular RNAs in diseases
article

A model of multi-view contrastive hypergraph learning for predicting circRNA-disease associations

Xiujuan Ma, Cheng-Wei Ruan, Lei Wang, Jiaqi Liu, Changqing Yu
article en

Abstract

In recent years, circRNAs have been found to be closely related to a variety of human diseases. In-depth exploration of their potential associations with diseases is of great value for understanding disease mechanisms and auxiliary diagnosis. To address the association between circRNAs and human diseases, this paper proposes a multi-view contrastive learning model MCHG that integrates attention mechanism and hypergraph structure modeling. The model first constructs a multi-view hypergraph structure based on the circRNA-disease heterogeneous network to capture high-order relationships between nodes. Subsequently, a hypergraph convolutional network is used to extract structured features from different perspectives, and an improved contrastive learning strategy is used to enhance the discriminative ability of feature representation. Furthermore, the model improves the convolutional block attention model, weighting features from two dimensions: channel and space, highlighting key information and suppressing redundant interference. The fused multi-view representations are input into the neural network projection module to achieve efficient prediction of potential associations by reconstructing the circRNA-disease association matrix. Validation experiments on the CircR2Disease dataset show that MCHG achieves an AUC of 0.9394 and an AUPR of 0.9602. Compared with previous models, MCHG can simultaneously model the high-order structural relationships and multi-perspective complementary information in the circRNA-disease heterogeneous network. Furthermore, it improves the quality of feature representation through improved contrastive learning and a two-dimensional attention weighting mechanism, thereby enhancing the accuracy and robustness of potential association prediction. In addition, among the top 25 unknown CDAs predicted by MCHG, 23 were confirmed by relevant literature, indicating that MCHG can effectively predict potential CDAs and provide assistance for further biological wet experiments.

Scientific Reports
Northwestern Polytechnical University (CN), Xuzhou Medical College (CN), China University of Mining and Technology (CN), Affiliated Hospital of Xuzhou Medical College (CN), Xijing University (CN)
National Natural Science Foundation of China
Reduced inequalities
Openalex Percentile: Top 9%
Circular RNAs in diseases
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.