Abstract LB423: Invigorating pre-existing tumor-infiltrating expandable (TIE) T cell clonotypes in exceptional responders with dual PARP-PD-1 blockade in homologous recombination deficient (HRD) pancreatic cancer

Abstract Background: Most pancreatic cancers (PC) are inert to immunotherapy, yet a subset of metastatic PC derives durable benefit from PARP-PD-1 blockade (POLAR trial, NCT04666740). The 2-year survival rate was 56% for patients with HRD disease (N=33). Previously, we identified circulating TCR clonotypes that expanded on treatment in responders. These clonotypes constituted 0.05% of circulating TCRs at baseline and 10% were barcode-matched to intratumoral T cells by scTCR-seq, defining tumor-infiltrating expanding (TIE) clonotypes. TIE clonotypes were identified exclusively in 7 exceptional responders (minimum OS > 18m, median OS not reached). However, the T cell lineage, state and spatial organization of TIE clonotypes remain unknown. Methods: We performed Xenium spatial transcriptomics of 53 longitudinal primary and metastatic samples from 36 POLAR participants, including 5 exceptional responders using a customized 480-gene panel, including probes designed for specific TIE clonotypes (N=18) identification. High-quality neoepitopes from long-term responders were predicted from exome sequencing and subsequently generated for functional T-cell activation assays. Results: Over 3.2 million malignant and stromal cells were profiled spatially. TIE+ clonotypes were detected at the time of diagnosis, prior to any systemic treatment, in both available samples (2/2) and persisted at least 3 years from initiation of PARP/PD-1 blockade. In the 5 exceptional responders, TIE+ clonotypes accounted for 1.49% of the intratumoral CD8 T-cell compartment across all timepoints. Prior to disease progression, TIE+ clonotypes were restricted to the CD8⁺ T cell lineage, and were spatially closer to tumor cells than TIE⁻ CD8⁺ T cells (median distance 62 vs 121 µm), while also displaying enhanced cytotoxicity (IFNG⁺), a type 1 effector profile (TBX21+), and chronic antigen-driven activation (ENTPD1+, TOX+). In contrast, at disease progression, the median distance between TIE+ CD8⁺ T cells and tumor cells increased to 82 µm, along with TIE detection among FoxP3+ CTLA4+ Tregs (36% of TIE). Baseline resistance was associated with an MKI67^hi malignant cell state exhibiting enhanced KRAS signaling activity, coupled with myofibroblast-driven stromal remodeling that constrained T-cell infiltration. Predicted neopeptides in TIE+ responders are undergoing functional T cell assays to elucidate specific immune responses. Conclusions: Exceptional benefit from PARP-PD-1 blockade in PC is associated with the expansion and sustained intratumoral positioning of rare, pre-existing tumor-reactive CD8⁺ T cell clonotypes. These data support a model in which select HRD tumors are immunogenic from disease onset and resistance emerges at least partly through stromal remodeling and spatial immune exclusion. Citation Format: Marc Hilmi, Wilson Mckerrow, Joshua D. Schoenfeld, Shigeaki Umeda, Nuray Tezcan, Catherine O'Connor, Yuval Elhanati, Charlotte Reiche, Martina Milighetti, Mara Sherman, Elias-Ramzey Karnoub, Roshan Sharma, Vincenzo Nasca, Kevin Soares, Zeynep Tarcan, Jerry Melchor, Olca Basturk, Nadeem Riaz, Nicolas Lecomte, Vinod P. Balachandran, Dana Pe’er, Benjamin D. Greenbaum, Christine A. Iacobuzio-Donahue, Eileen M. O'Reilly, Wungki Park. Invigorating pre-existing tumor-infiltrating expandable (TIE) T cell clonotypes in exceptional responders with dual PARP-PD-1 blockade in homologous recombination deficient (HRD) pancreatic cancer [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2026; Part 2 (Late-Breaking, Clinical Trial, and Invited Abstracts); 2026 Apr 17-22; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2026;86(8_Suppl):Abstract nr LB423.

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Cancer Research
Published
2026-04-17
DOI
https://doi.org/10.1158/1538-7445.am2026-lb423
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Single-cell and spatial transcriptomics
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article

Abstract LB423: Invigorating pre-existing tumor-infiltrating expandable (TIE) T cell clonotypes in exceptional responders with dual PARP-PD-1 blockade in homologous recombination deficient (HRD) pancreatic cancer

Yuval Elhanati, Jerry P. Melchor, Mara H. Sherman, Martina Milighetti et al.
Cancer Research
Single-cell and spatial transcriptomics
article

Abstract LB423: Invigorating pre-existing tumor-infiltrating expandable (TIE) T cell clonotypes in exceptional responders with dual PARP-PD-1 blockade in homologous recombination deficient (HRD) pancreatic cancer

Yuval Elhanati, Jerry P. Melchor, Mara H. Sherman, Martina Milighetti, Marc Hilmi, Benjamin D. Greenbaum, Charlotte Reiche, Vincenzo Nasca, N Riaz, Wilson McKerrow, Nuray Tezcan, Dana Pe’er, Vinod P. Balachandran, Kevin Soares, Shigeaki Umeda, Nicolas Lecomte, Catherine O'Connor, Wungki Park, Roshan Sharma, Joshua D. Schoenfeld, Zeynep Tarcan, Olca Basturk, Eileen M. O'Reilly, Christine A. Iacobuzio-Donahue, Elias-Ramzey Karnoub
article en

Abstract

Abstract Background: Most pancreatic cancers (PC) are inert to immunotherapy, yet a subset of metastatic PC derives durable benefit from PARP-PD-1 blockade (POLAR trial, NCT04666740). The 2-year survival rate was 56% for patients with HRD disease (N=33). Previously, we identified circulating TCR clonotypes that expanded on treatment in responders. These clonotypes constituted 0.05% of circulating TCRs at baseline and 10% were barcode-matched to intratumoral T cells by scTCR-seq, defining tumor-infiltrating expanding (TIE) clonotypes. TIE clonotypes were identified exclusively in 7 exceptional responders (minimum OS > 18m, median OS not reached). However, the T cell lineage, state and spatial organization of TIE clonotypes remain unknown. Methods: We performed Xenium spatial transcriptomics of 53 longitudinal primary and metastatic samples from 36 POLAR participants, including 5 exceptional responders using a customized 480-gene panel, including probes designed for specific TIE clonotypes (N=18) identification. High-quality neoepitopes from long-term responders were predicted from exome sequencing and subsequently generated for functional T-cell activation assays. Results: Over 3.2 million malignant and stromal cells were profiled spatially. TIE+ clonotypes were detected at the time of diagnosis, prior to any systemic treatment, in both available samples (2/2) and persisted at least 3 years from initiation of PARP/PD-1 blockade. In the 5 exceptional responders, TIE+ clonotypes accounted for 1.49% of the intratumoral CD8 T-cell compartment across all timepoints. Prior to disease progression, TIE+ clonotypes were restricted to the CD8⁺ T cell lineage, and were spatially closer to tumor cells than TIE⁻ CD8⁺ T cells (median distance 62 vs 121 µm), while also displaying enhanced cytotoxicity (IFNG⁺), a type 1 effector profile (TBX21+), and chronic antigen-driven activation (ENTPD1+, TOX+). In contrast, at disease progression, the median distance between TIE+ CD8⁺ T cells and tumor cells increased to 82 µm, along with TIE detection among FoxP3+ CTLA4+ Tregs (36% of TIE). Baseline resistance was associated with an MKI67^hi malignant cell state exhibiting enhanced KRAS signaling activity, coupled with myofibroblast-driven stromal remodeling that constrained T-cell infiltration. Predicted neopeptides in TIE+ responders are undergoing functional T cell assays to elucidate specific immune responses. Conclusions: Exceptional benefit from PARP-PD-1 blockade in PC is associated with the expansion and sustained intratumoral positioning of rare, pre-existing tumor-reactive CD8⁺ T cell clonotypes. These data support a model in which select HRD tumors are immunogenic from disease onset and resistance emerges at least partly through stromal remodeling and spatial immune exclusion. Citation Format: Marc Hilmi, Wilson Mckerrow, Joshua D. Schoenfeld, Shigeaki Umeda, Nuray Tezcan, Catherine O'Connor, Yuval Elhanati, Charlotte Reiche, Martina Milighetti, Mara Sherman, Elias-Ramzey Karnoub, Roshan Sharma, Vincenzo Nasca, Kevin Soares, Zeynep Tarcan, Jerry Melchor, Olca Basturk, Nadeem Riaz, Nicolas Lecomte, Vinod P. Balachandran, Dana Pe’er, Benjamin D. Greenbaum, Christine A. Iacobuzio-Donahue, Eileen M. O'Reilly, Wungki Park. Invigorating pre-existing tumor-infiltrating expandable (TIE) T cell clonotypes in exceptional responders with dual PARP-PD-1 blockade in homologous recombination deficient (HRD) pancreatic cancer [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2026; Part 2 (Late-Breaking, Clinical Trial, and Invited Abstracts); 2026 Apr 17-22; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2026;86(8_Suppl):Abstract nr LB423.

Cancer ResearchVol. 86(8_Supplement)
Memorial Sloan Kettering Cancer Center (US)
Openalex Percentile: Top 19%
Single-cell and spatial transcriptomics
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