Complete chloroplast genome of the endemic species <i>Hoya lockii</i> (Apocynaceae) from Viet Nam

Here we report the first chloroplast genome of Hoya lockii V.T. Pham & Aver., sequenced as a circular DNA molecule (177,063 bp) comprising a large single-copy region (91,635 bp), a small single-copy region (2,242 bp), and two inverted repeats (41,593 bp), with a GC content of 36.9%. A total of 144 genes were annotated, including 98 protein-coding, 38 tRNA, and eight rRNA genes. Phylogenetic reconstruction based on 79 protein-coding genes from 50 Apocynaceae species placed H. lockii as sister to Hoya exilis with strong bootstrap support (93%). These results indicate pronounced SSC contraction and IR expansion, consistent with Hoya evolution.

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Publication Details

Journal
Mitochondrial DNA Part B
Published
2026-04-17
DOI
https://doi.org/10.1080/23802359.2026.2658954
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
0.00

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article

Complete chloroplast genome of the endemic species Hoya lockii (Apocynaceae) from Viet Nam

Sangjin Jo, Manivanh Yongsa, Nga Thi Thu Nguyen, Changyoung Lee et al.
Mitochondrial DNA Part B
Genomics and Phylogenetic Studies
article

Complete chloroplast genome of the endemic species Hoya lockii (Apocynaceae) from Viet Nam

Sangjin Jo, Manivanh Yongsa, Nga Thi Thu Nguyen, Changyoung Lee, Mau Hoang Chu, Thuong Danh Sy, Quan Huu Nguyen
article en

Abstract

Here we report the first chloroplast genome of Hoya lockii V.T. Pham & Aver., sequenced as a circular DNA molecule (177,063 bp) comprising a large single-copy region (91,635 bp), a small single-copy region (2,242 bp), and two inverted repeats (41,593 bp), with a GC content of 36.9%. A total of 144 genes were annotated, including 98 protein-coding, 38 tRNA, and eight rRNA genes. Phylogenetic reconstruction based on 79 protein-coding genes from 50 Apocynaceae species placed H. lockii as sister to Hoya exilis with strong bootstrap support (93%). These results indicate pronounced SSC contraction and IR expansion, consistent with Hoya evolution.

Mitochondrial DNA Part BVol. 11(5)
Thai Nguyen University (VN), Korea Research Institute of Bioscience and Biotechnology (KR)
Korea Research Institute of Bioscience and Biotechnology
Life in Land
Openalex Percentile: Top 20%
Genomics and Phylogenetic Studies
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Complete chloroplast genome of the endemic species <i>Hoya lockii</i> (Apocynaceae) from Viet Nam — Sangjin Jo, Manivanh Yongsa, et al. · Mitochondrial DNA Part B (2026) | TGRS Research Map | TGRS