Markov State Models for Tracking Reaction Dynamics on Catalytic Nanoparticles

Markov state models (MSMs) are a powerful tool to analyze and coarse-grain complex dynamical data into interpretable kinetic processes. This capability is particularly important in heterogeneous catalysis, where a medley of reactants and intermediates interact on surfaces that might simultaneously experience structural fluctuations. For these very complex systems, standard transition state theory (TST) approaches are no longer appropriate, motivating alternative approaches that can retain dynamical complexity while providing physical insight. With machine-learned interatomic potentials being more and more ubiquitous, directly simulating complex catalytic systems with molecular dynamics (MD) is becoming increasingly feasible. Extending MSMs to dynamically coarse-grain MD simulation data of catalytic processes, we analyze hydrogen dynamics on rhodium catalysts with slab and nanoparticle geometries over a range of hydrogen surface concentrations. Nanoparticle features, such as corners and edges, effectively slow down the association/dissociation process, and the cooperative behavior of hydrogen-hydrogen interactions leads to a nonmonotonic concentration dependence of the rates, which would not be predicted with standard TST.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2026-04-16
DOI
https://doi.org/10.1021/acs.jctc.6c00277
Primary Topic
Molecular Communication and Nanonetworks
Type
article
Field-Weighted Citation Impact
0.00

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article

Markov State Models for Tracking Reaction Dynamics on Catalytic Nanoparticles

Jutta Rogal, Timothy C. Berkelbach, Caitlin A. McCandler, Chatipat Lorpaiboon
Journal of Chemical Theory and Computation
Molecular Communication and Nanonetworks
article

Markov State Models for Tracking Reaction Dynamics on Catalytic Nanoparticles

Jutta Rogal, Timothy C. Berkelbach, Caitlin A. McCandler, Chatipat Lorpaiboon
article en

Abstract

Markov state models (MSMs) are a powerful tool to analyze and coarse-grain complex dynamical data into interpretable kinetic processes. This capability is particularly important in heterogeneous catalysis, where a medley of reactants and intermediates interact on surfaces that might simultaneously experience structural fluctuations. For these very complex systems, standard transition state theory (TST) approaches are no longer appropriate, motivating alternative approaches that can retain dynamical complexity while providing physical insight. With machine-learned interatomic potentials being more and more ubiquitous, directly simulating complex catalytic systems with molecular dynamics (MD) is becoming increasingly feasible. Extending MSMs to dynamically coarse-grain MD simulation data of catalytic processes, we analyze hydrogen dynamics on rhodium catalysts with slab and nanoparticle geometries over a range of hydrogen surface concentrations. Nanoparticle features, such as corners and edges, effectively slow down the association/dissociation process, and the cooperative behavior of hydrogen-hydrogen interactions leads to a nonmonotonic concentration dependence of the rates, which would not be predicted with standard TST.

Journal of Chemical Theory and ComputationVol. 22(8)
Institute of Catalysis and Petrochemistry (RU), Flatiron Health (United States) (US), Flatiron Institute (US), Columbia University (US)
Simons Foundation
Openalex Percentile: Top 18%
Molecular Communication and Nanonetworks
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