Chromosome level genome assembly of the American sloughgrass (Beckmannia syzigachne)

American sloughgrass [Beckmannia syzigachne (Steud.) Fernald] is a problematic annual grass weed in winter wheat fields of China, which causes great loss of wheat yield. A lack of high-quality genome resources has hindered understanding of the Herbicide resistance characteristics and ecological adaptations. Here, we combined Illumina short read, PacBio long-read, and high-throughput chromosome conformation capture (Hi-C) sequencing technologies to generate a high-quality, chromosome-scale genome assembly of B. syzigachne. The genome assembly was 3.19 Gb in size, consisting of seven pseudo-chromosomes. The contig and scaffold N50 values were 62.2 Mb and 431.7 Mb, respectively. The genome assembly completeness was estimated at 97.1% by BUSCO assessment. Annotation revealed 36,944 protein-coding genes and 88.83% repeat sequences. This high-quality genome assembly is a valuable resource for future fundamental research and agricultural management of B. syzigachne, and provides significant new insights into the herbicide resistance as well as the adaptive evolution of B. syzigachne.

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Publication Details

Journal
Scientific Data
Published
2026-04-16
DOI
https://doi.org/10.1038/s41597-026-06836-w
Primary Topic
Weed Control and Herbicide Applications
Type
article
Field-Weighted Citation Impact
0.00

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article

Chromosome level genome assembly of the American sloughgrass (Beckmannia syzigachne)

Yongliang Lu, Zhongxian Lü, Huangjie Gao, Hongxing Xu et al.
Scientific Data
Weed Control and Herbicide Applications
article

Chromosome level genome assembly of the American sloughgrass (Beckmannia syzigachne)

Yongliang Lu, Zhongxian Lü, Huangjie Gao, Hongxing Xu, Wei Tang, Chuanlin Yin
article en

Abstract

American sloughgrass [Beckmannia syzigachne (Steud.) Fernald] is a problematic annual grass weed in winter wheat fields of China, which causes great loss of wheat yield. A lack of high-quality genome resources has hindered understanding of the Herbicide resistance characteristics and ecological adaptations. Here, we combined Illumina short read, PacBio long-read, and high-throughput chromosome conformation capture (Hi-C) sequencing technologies to generate a high-quality, chromosome-scale genome assembly of B. syzigachne. The genome assembly was 3.19 Gb in size, consisting of seven pseudo-chromosomes. The contig and scaffold N50 values were 62.2 Mb and 431.7 Mb, respectively. The genome assembly completeness was estimated at 97.1% by BUSCO assessment. Annotation revealed 36,944 protein-coding genes and 88.83% repeat sequences. This high-quality genome assembly is a valuable resource for future fundamental research and agricultural management of B. syzigachne, and provides significant new insights into the herbicide resistance as well as the adaptive evolution of B. syzigachne.

Scientific Data
ZheJiang Academy of Agricultural Sciences (CN), China National Rice Research Institute (CN), China Jiliang University (CN)
Chinese Academy of Agricultural Sciences, Agricultural Science and Technology Innovation Program
Zero hunger
Openalex Percentile: Top 12%
Weed Control and Herbicide Applications
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