pendrin-qsar: An Open-Source QSAR Pipeline for Pendrin (SLC26A4) Inhibitors

An open-source cheminformatics and machine learning pipeline for pendrin (SLC26A4) inhibitors. Includes a curated dataset of 16 unique inhibitors across 6 scaffold classes, four QSAR models (Random Forest, XGBoost, Ridge, PLS) validated by LOO-CV, Y-scrambling, applicability domain analysis, and conformal prediction, plus virtual screening of 13 novel benzofuran analogs. Top predicted virtual screening hit: V-2F4Cl (predicted IC50 = 0.86 µM, 80% CI: 0.43-1.73 µM). Code runs in a single click in Google Colab with no installation required. GitHub: https://github.com/drjoykarmakar/pendrin-qsar

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-04-12
DOI
https://doi.org/10.5281/zenodo.19534440
Primary Topic
Computational Drug Discovery Methods
Type
article
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article

pendrin-qsar: An Open-Source QSAR Pipeline for Pendrin (SLC26A4) Inhibitors

Joy Karmakar
Zenodo (CERN European Organization for Nuclear Research)
Computational Drug Discovery Methods
article

pendrin-qsar: An Open-Source QSAR Pipeline for Pendrin (SLC26A4) Inhibitors

Joy Karmakar
article en

Abstract

An open-source cheminformatics and machine learning pipeline for pendrin (SLC26A4) inhibitors. Includes a curated dataset of 16 unique inhibitors across 6 scaffold classes, four QSAR models (Random Forest, XGBoost, Ridge, PLS) validated by LOO-CV, Y-scrambling, applicability domain analysis, and conformal prediction, plus virtual screening of 13 novel benzofuran analogs. Top predicted virtual screening hit: V-2F4Cl (predicted IC50 = 0.86 µM, 80% CI: 0.43-1.73 µM). Code runs in a single click in Google Colab with no installation required. GitHub: https://github.com/drjoykarmakar/pendrin-qsar

Zenodo (CERN European Organization for Nuclear Research)
University of California, San Francisco (US)
Life in Land
Openalex Percentile: Top 12%
Computational Drug Discovery Methods
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