KRAS inhibition is an effective therapy for appendiceal adenocarcinoma

Background: is the most commonly mutated gene in AA and a promising therapeutic target, but its preclinical and translational relevance in AA remains unclear. Methods: organoid and orthotopic PDX models of AA. Tumor-intrinsic and microenvironmental responses were characterized using multi-omics profiling. Clinical outcomes were also assessed in six heavily pre-treated AA patients treated with KRAS inhibitors. Results: model AAPDX-16. Pathologic evaluation showed dramatically reduced tumor cellularity, proliferation, and pERK expression as well as induction of apoptosis. Gene Sets Enrichment Analysis (GSEA) revealed significant downregulations of 'E2F targets (NES=-1.9, p-adj=0.06) and the newly developed 'RAS/ERK (NES=-2.3, p-adj=0.06)' gene set, consistent with the observed decrease in cell proliferation. There was marked upregulation of EMT (NES=2.7, FDR<0.001) and TGF-β signaling (NES=2.3, FDR=0.004) in remaining tumor cells, suggesting these pathways could confer resistance. scRNA-seq analysis of TME showed dramatic shifts in cancer-associated fibroblasts (CAFs), with KRAS inhibition driving a shift from normal fibroblasts to inflammatory CAFs, and upregulation of interferon alpha and gamma pathways, suggesting that KRAS inhibition can activate innate immune response in the setting of peritoneal metastases. In a cohort of 6 heavily pre-treated patients with AA treated with KRAS inhibitors (1 G12D, 3 G12C, 2 pan-KRAS), all had biochemical response based on CEA/Ca19-9 or ctDNA and clinical benefit by RECIST criteria (1 CR, 1 PR, 4 SD). Conclusions: AA. Additionally, KRAS inhibition remodels TME and may enhance innate immune signaling. These findings support continued clinical development of KRAS inhibitors in AA and provide a rationale for combination strategies targeting resistance pathways and stromal remodeling.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-04-10
DOI
https://doi.org/10.64898/2026.04.07.717107
Primary Topic
Intraperitoneal and Appendiceal Malignancies
Type
article
Field-Weighted Citation Impact
0.00

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article

KRAS inhibition is an effective therapy for appendiceal adenocarcinoma

Melissa W. Taggart, John Paul Shen, Wai Chin Foo, Keith F. Fournier et al.
bioRxiv (Cold Spring Harbor Laboratory)
Intraperitoneal and Appendiceal Malignancies
article

KRAS inhibition is an effective therapy for appendiceal adenocarcinoma

Melissa W. Taggart, John Paul Shen, Wai Chin Foo, Keith F. Fournier, Ichiaki Ito, Abdelrahman Yousef, Beth A. Helmink, Vinay K. Pattalachinti, Nicholas J. Hornstein, Ashlee Seldomridge, Sacha El Khoury, Mahmoud M.G. Yousef, David Hong, Micheal J. Overman, Saikat Chowdhury
article en

Abstract

Background: is the most commonly mutated gene in AA and a promising therapeutic target, but its preclinical and translational relevance in AA remains unclear. Methods: organoid and orthotopic PDX models of AA. Tumor-intrinsic and microenvironmental responses were characterized using multi-omics profiling. Clinical outcomes were also assessed in six heavily pre-treated AA patients treated with KRAS inhibitors. Results: model AAPDX-16. Pathologic evaluation showed dramatically reduced tumor cellularity, proliferation, and pERK expression as well as induction of apoptosis. Gene Sets Enrichment Analysis (GSEA) revealed significant downregulations of 'E2F targets (NES=-1.9, p-adj=0.06) and the newly developed 'RAS/ERK (NES=-2.3, p-adj=0.06)' gene set, consistent with the observed decrease in cell proliferation. There was marked upregulation of EMT (NES=2.7, FDR<0.001) and TGF-β signaling (NES=2.3, FDR=0.004) in remaining tumor cells, suggesting these pathways could confer resistance. scRNA-seq analysis of TME showed dramatic shifts in cancer-associated fibroblasts (CAFs), with KRAS inhibition driving a shift from normal fibroblasts to inflammatory CAFs, and upregulation of interferon alpha and gamma pathways, suggesting that KRAS inhibition can activate innate immune response in the setting of peritoneal metastases. In a cohort of 6 heavily pre-treated patients with AA treated with KRAS inhibitors (1 G12D, 3 G12C, 2 pan-KRAS), all had biochemical response based on CEA/Ca19-9 or ctDNA and clinical benefit by RECIST criteria (1 CR, 1 PR, 4 SD). Conclusions: AA. Additionally, KRAS inhibition remodels TME and may enhance innate immune signaling. These findings support continued clinical development of KRAS inhibitors in AA and provide a rationale for combination strategies targeting resistance pathways and stromal remodeling.

bioRxiv (Cold Spring Harbor Laboratory)
Roswell Park Comprehensive Cancer Center (US), Northwell Health (US), The University of Texas MD Anderson Cancer Center (US)
Conquer Cancer Foundation, Cancer Prevention and Research Institute of Texas, Andrew Sabin Family Foundation, University of Texas MD Anderson Cancer Center, National Cancer Institute
Good health and well-being
Openalex Percentile: Top 30%
Intraperitoneal and Appendiceal Malignancies
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