KRAS inhibition is an effective therapy for appendiceal adenocarcinoma
Background: is the most commonly mutated gene in AA and a promising therapeutic target, but its preclinical and translational relevance in AA remains unclear. Methods: organoid and orthotopic PDX models of AA. Tumor-intrinsic and microenvironmental responses were characterized using multi-omics profiling. Clinical outcomes were also assessed in six heavily pre-treated AA patients treated with KRAS inhibitors. Results: model AAPDX-16. Pathologic evaluation showed dramatically reduced tumor cellularity, proliferation, and pERK expression as well as induction of apoptosis. Gene Sets Enrichment Analysis (GSEA) revealed significant downregulations of 'E2F targets (NES=-1.9, p-adj=0.06) and the newly developed 'RAS/ERK (NES=-2.3, p-adj=0.06)' gene set, consistent with the observed decrease in cell proliferation. There was marked upregulation of EMT (NES=2.7, FDR<0.001) and TGF-β signaling (NES=2.3, FDR=0.004) in remaining tumor cells, suggesting these pathways could confer resistance. scRNA-seq analysis of TME showed dramatic shifts in cancer-associated fibroblasts (CAFs), with KRAS inhibition driving a shift from normal fibroblasts to inflammatory CAFs, and upregulation of interferon alpha and gamma pathways, suggesting that KRAS inhibition can activate innate immune response in the setting of peritoneal metastases. In a cohort of 6 heavily pre-treated patients with AA treated with KRAS inhibitors (1 G12D, 3 G12C, 2 pan-KRAS), all had biochemical response based on CEA/Ca19-9 or ctDNA and clinical benefit by RECIST criteria (1 CR, 1 PR, 4 SD). Conclusions: AA. Additionally, KRAS inhibition remodels TME and may enhance innate immune signaling. These findings support continued clinical development of KRAS inhibitors in AA and provide a rationale for combination strategies targeting resistance pathways and stromal remodeling.
Authors
- Melissa W. Taggart (ORCID: https://orcid.org/0000-0002-7803-9904)
- John Paul Shen (ORCID: https://orcid.org/0000-0003-4588-2775)
- Wai Chin Foo (ORCID: https://orcid.org/0000-0002-0471-4911)
- Keith F. Fournier (ORCID: https://orcid.org/0000-0002-7882-9826)
- Ichiaki Ito (ORCID: https://orcid.org/0000-0002-3425-0070)
- Abdelrahman Yousef (ORCID: https://orcid.org/0000-0001-7761-8149)
- Beth A. Helmink (ORCID: https://orcid.org/0000-0002-8206-0351)
- Vinay K. Pattalachinti (ORCID: https://orcid.org/0009-0007-7293-0548)
- Nicholas J. Hornstein (ORCID: https://orcid.org/0000-0003-2089-8236)
- Ashlee Seldomridge (ORCID: https://orcid.org/0000-0001-9635-5006)
- Sacha El Khoury (ORCID: https://orcid.org/0009-0007-5432-6363)
- Mahmoud M.G. Yousef
- David Hong
- Micheal J. Overman
- Saikat Chowdhury
Institutions
- Roswell Park Comprehensive Cancer Center (US)
- Northwell Health (US)
- The University of Texas MD Anderson Cancer Center (US)
Publication Details
- Journal
- bioRxiv (Cold Spring Harbor Laboratory)
- Published
- 2026-04-10
- DOI
- https://doi.org/10.64898/2026.04.07.717107
- Primary Topic
- Intraperitoneal and Appendiceal Malignancies
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- Conquer Cancer Foundation
- Cancer Prevention and Research Institute of Texas
- Andrew Sabin Family Foundation
- University of Texas MD Anderson Cancer Center
- National Cancer Institute