A Cautionary Case for Host Assignment Based on Broad Environmental <i>bla</i> <scp> <sub>OXA</sub> </scp> Carriers
genes. Phenotypic testing showed elevated cephalosporin minimal but no carbapenem resistance, consistent with the nature of carbapenem-hydrolysing class D β-lactamases. Our findings reveal that reliance on reference-based metagenomic host prediction can underestimate the diversity of environmental ARG reservoirs. This integrated approach highlights the need for cautious interpretation of metagenomic host assignments and the importance of coupling metagenomic pipelines with culture-dependent validation when assessing ARG ecology in the natural environments.
Authors
- Hor‐Gil Hur (ORCID: https://orcid.org/0000-0001-5077-3886)
- Min Ki Jeon (ORCID: https://orcid.org/0000-0003-1617-5318)
- Hanseob Shin (ORCID: https://orcid.org/0000-0001-8814-3708)
Institutions
- University of Hawaiʻi at Mānoa (US)
- University of Iowa (US)
- University of Hawaii System (US)
- Iowa State University (US)
- Gwangju Institute of Science and Technology (KR)
Publication Details
- Journal
- Environmental Microbiology Reports
- Published
- 2026-04-01
- DOI
- https://doi.org/10.1111/1758-2229.70327
- Primary Topic
- Antibiotic Resistance in Bacteria
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- National Research Foundation of Korea