FLASH: A high-efficiency soybean-native protoplast platform for real-time protein localization and interaction studies

Soybean ( Glycine max (L.) Merr.), is one of the world’s most important oilseed and economic crops, yet its cell-biology-oriented gene-function studies remain hampered by low transformation efficiency and poor detection of fluorescent tags such as GFP. Researchers therefore routinely resort to heterologous systems like Arabidopsis or Nicotiana benthamiana , risking mis-localization and artifactual activity of soybean proteins and compromising physiological relevance. A robust, soybean-based platform is urgently needed. In this study, we introduce FLASH ( F luorescent L ocalization A ssay for S ubcellular in H airy-root-derived callus protoplasts). Transgenic hairy roots expressing fluorescent proteins are bulked into callus, from which protoplasts are isolated in a single step, > 80% of cells display bright, stable fluorescence within 24 h. Using FLASH we monitored, in real time, light-induced assembly of GmCRY photobodies in both the nucleus and cytoplasm, and confirmed nuclear co-localization of GmCRY1b with STF1. FLASH offers a high-fidelity, high-throughput solution for subcellular localization, protein–protein interaction and phase-separation studies of soybean proteins.

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Publication Details

Journal
The Crop Journal
Published
2026-04-01
DOI
https://doi.org/10.1016/j.cj.2026.03.006
Primary Topic
Machine Learning in Bioinformatics
Type
article
Field-Weighted Citation Impact
0.00

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article

FLASH: A high-efficiency soybean-native protoplast platform for real-time protein localization and interaction studies

Tao Zhao, Ronghuan Ji, Bin Liu, Jun Liu et al.
The Crop Journal
Machine Learning in Bioinformatics
article

FLASH: A high-efficiency soybean-native protoplast platform for real-time protein localization and interaction studies

Tao Zhao, Ronghuan Ji, Bin Liu, Jun Liu, Hongyu Li, Chao Qin, Xiuzhi Wei
article en

Abstract

Soybean ( Glycine max (L.) Merr.), is one of the world’s most important oilseed and economic crops, yet its cell-biology-oriented gene-function studies remain hampered by low transformation efficiency and poor detection of fluorescent tags such as GFP. Researchers therefore routinely resort to heterologous systems like Arabidopsis or Nicotiana benthamiana , risking mis-localization and artifactual activity of soybean proteins and compromising physiological relevance. A robust, soybean-based platform is urgently needed. In this study, we introduce FLASH ( F luorescent L ocalization A ssay for S ubcellular in H airy-root-derived callus protoplasts). Transgenic hairy roots expressing fluorescent proteins are bulked into callus, from which protoplasts are isolated in a single step, > 80% of cells display bright, stable fluorescence within 24 h. Using FLASH we monitored, in real time, light-induced assembly of GmCRY photobodies in both the nucleus and cytoplasm, and confirmed nuclear co-localization of GmCRY1b with STF1. FLASH offers a high-fidelity, high-throughput solution for subcellular localization, protein–protein interaction and phase-separation studies of soybean proteins.

The Crop Journal
Institute of Crop Sciences (CN)
National Natural Science Foundation of China
Zero hunger
Openalex Percentile: Top 21%
Machine Learning in Bioinformatics
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