An expedited chart review process for large database studies using natural language processing and multi-wave adaptive sampling

BACKGROUND: One of the ways to enhance analyses conducted with large claims databases is by validating the measurement characteristics of the code-based algorithms used to identify health outcomes or other key study parameters of interest. These metrics can be used in quantitative bias analyses to assess the robustness of results for an inferential study given potential bias from outcome misclassification. However, performing this validation through manual chart review of free-text notes from linked electronic health records requires extensive time and resource allocation. METHODS: We describe an expedited process for validating code-based algorithms that introduces efficiency using two distinct mechanisms: 1) use of natural language processing (NLP) to reduce time spent by human reviewers to review each chart, and 2) a multi-wave adaptive sampling approach with pre-defined criteria to stop the validation study once performance characteristics are identified with sufficient precision. We illustrate this process in a case study that validates the performance of a claims-based outcome algorithm for intentional self-harm in patients with obesity. RESULTS: We empirically demonstrate that the NLP-assisted annotation process reduced the time spent on review per chart by 40% and use of the pre-defined stopping rule with multi-wave samples would have prevented review of 77% of patient charts with limited compromise to precision of performance characteristics. CONCLUSION: This approach could facilitate more routine validation of code-based algorithms used to define key study parameters, ultimately enhancing understanding of the reliability of findings derived from database studies.

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Publication Details

Journal
Epidemiology
Published
2026-04-07
DOI
https://doi.org/10.1097/ede.0000000000001978
Primary Topic
Meta-analysis and systematic reviews
Type
article
Field-Weighted Citation Impact
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article

An expedited chart review process for large database studies using natural language processing and multi-wave adaptive sampling

Rishi Desai, Joyce Lii, Sarah K. Dutcher, Sengwee Toh et al.
Epidemiology
Meta-analysis and systematic reviews
article

An expedited chart review process for large database studies using natural language processing and multi-wave adaptive sampling

Rishi Desai, Joyce Lii, Sarah K. Dutcher, Sengwee Toh, Rajendra Aldis, Mufaddal Mahesri, Jamal Jones, K. E. Kim, Haritha S. Pillai, Rhoda Eniafe, Jiwei He, Hana Lee, Jie Yang, Georg Hahn, Shirley V Wang, Sushama Kattinakere Sreedhara
article en

Abstract

BACKGROUND: One of the ways to enhance analyses conducted with large claims databases is by validating the measurement characteristics of the code-based algorithms used to identify health outcomes or other key study parameters of interest. These metrics can be used in quantitative bias analyses to assess the robustness of results for an inferential study given potential bias from outcome misclassification. However, performing this validation through manual chart review of free-text notes from linked electronic health records requires extensive time and resource allocation. METHODS: We describe an expedited process for validating code-based algorithms that introduces efficiency using two distinct mechanisms: 1) use of natural language processing (NLP) to reduce time spent by human reviewers to review each chart, and 2) a multi-wave adaptive sampling approach with pre-defined criteria to stop the validation study once performance characteristics are identified with sufficient precision. We illustrate this process in a case study that validates the performance of a claims-based outcome algorithm for intentional self-harm in patients with obesity. RESULTS: We empirically demonstrate that the NLP-assisted annotation process reduced the time spent on review per chart by 40% and use of the pre-defined stopping rule with multi-wave samples would have prevented review of 77% of patient charts with limited compromise to precision of performance characteristics. CONCLUSION: This approach could facilitate more routine validation of code-based algorithms used to define key study parameters, ultimately enhancing understanding of the reliability of findings derived from database studies.

Epidemiology
Brigham and Women's Hospital (US), Center for Drug Evaluation and Research (US), Harvard University (US), Harvard Pilgrim Health Care (US)
Quality Education
Openalex Percentile: Top 36%
Meta-analysis and systematic reviews
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