An Interpretable Deep Learning Approach for Brain Tumor Classification Using a Bangladeshi Brain MRI Dataset

Magnetic resonance imaging (MRI) is a critical clinical tool that requires precise and reliable interpretation for effective brain tumor diagnosis and timely treatment planning. Deep learning methods have advanced automated tumor classification greatly in the last few years, but many of the current methods are still challenged by a lack of interpretability, a lack of testing on region-focused data, and a lack of model robustness testing. Such limitations reduce clinical trust and limit the practice of automated diagnostic systems. To address these challenges, this study proposes an interpretable deep learning model for classifying brain tumors using the PMRAM dataset, which is a Bangladeshi brain MRI collection containing four categories: glioma, meningioma, pituitary tumor, and normal brain.. The proposed pipeline combines image preprocessing and feature enhancement methods, and then it trains a series of squeeze-and-excitation (SE)-enhanced convolutional neural networks such as VGG19, DenseNet201, MobileNetV3-Large, InceptionV3, and EfficientNetB3. The SE-enhanced EfficientNetB3 performed best, with 98.70% accuracy, 98.77% precision, 98.70% recall, and 98.70% F1-score. Cross-validation also demonstrated stable performance, with a mean accuracy of 96.89%. The model also exhibited efficient inference with low GPU memory consumption, enabling predictions in about 2–4 s per MRI image. Grad-CAM++ and saliency maps were used to improve the transparency of the results, and it was found that the network was concentrated on the clinically significant parts of the tumor, which affected the model predictions. Further robustness analysis and cross-dataset testing are additional evidence of the generalization possibility of the model. An online application was also implemented to allow real-time prediction and visual explanation of brain tumors. Overall, the proposed framework offers a precise, interpretable, and promising solution to automated brain tumor classification using MRI images.

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Publication Details

Journal
BioMedInformatics
Published
2026-04-07
DOI
https://doi.org/10.3390/biomedinformatics6020019
Primary Topic
Brain Tumor Detection and Classification
Type
article
Field-Weighted Citation Impact
0.00

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article

An Interpretable Deep Learning Approach for Brain Tumor Classification Using a Bangladeshi Brain MRI Dataset

Jia Uddin, Mahe Zabin, Md. Saymon Hosen Polash, Tamim Hasan Saykat et al.
BioMedInformatics
Brain Tumor Detection and Classification
article

An Interpretable Deep Learning Approach for Brain Tumor Classification Using a Bangladeshi Brain MRI Dataset

Jia Uddin, Mahe Zabin, Md. Saymon Hosen Polash, Tamim Hasan Saykat, Md. Maniruzzaman, Md. Ehsanul Haque
article en

Abstract

Magnetic resonance imaging (MRI) is a critical clinical tool that requires precise and reliable interpretation for effective brain tumor diagnosis and timely treatment planning. Deep learning methods have advanced automated tumor classification greatly in the last few years, but many of the current methods are still challenged by a lack of interpretability, a lack of testing on region-focused data, and a lack of model robustness testing. Such limitations reduce clinical trust and limit the practice of automated diagnostic systems. To address these challenges, this study proposes an interpretable deep learning model for classifying brain tumors using the PMRAM dataset, which is a Bangladeshi brain MRI collection containing four categories: glioma, meningioma, pituitary tumor, and normal brain.. The proposed pipeline combines image preprocessing and feature enhancement methods, and then it trains a series of squeeze-and-excitation (SE)-enhanced convolutional neural networks such as VGG19, DenseNet201, MobileNetV3-Large, InceptionV3, and EfficientNetB3. The SE-enhanced EfficientNetB3 performed best, with 98.70% accuracy, 98.77% precision, 98.70% recall, and 98.70% F1-score. Cross-validation also demonstrated stable performance, with a mean accuracy of 96.89%. The model also exhibited efficient inference with low GPU memory consumption, enabling predictions in about 2–4 s per MRI image. Grad-CAM++ and saliency maps were used to improve the transparency of the results, and it was found that the network was concentrated on the clinically significant parts of the tumor, which affected the model predictions. Further robustness analysis and cross-dataset testing are additional evidence of the generalization possibility of the model. An online application was also implemented to allow real-time prediction and visual explanation of brain tumors. Overall, the proposed framework offers a precise, interpretable, and promising solution to automated brain tumor classification using MRI images.

BioMedInformaticsVol. 6(2)
Bay Institute (US), Woosong University (KR), East West University (BD)
Woosong University
Openalex Percentile: Top 26%
Brain Tumor Detection and Classification
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