Editorial: Forest soil microbiome and their interactions with the plants

Forests cover approx. 38 million km 2 of Earth's surface, and comprise billions of trees.In addition to food and timber production, the forest ecosystem also helps to sustain regional ecosystem services including reduction of carbon footprint and elemental biogeochemical cycling (Perry et al., 2008;Pan et al., 2011;Crowther., 2015;Li., et al 2023). Forests are extremely diverse ecosystems with a wide range of reactive interfaces mediated by microbes. These primarily include the root-soil, root-root, littersoil, and plant-atmosphere interfaces (Kim et al., 2012;Voříšková et al., 2014;Beckers et al., 2017). All these interfaces have distinct features, such as the factors influencing microbial diversity, microbial abundance of particular microbial species, and the nutritional availability (Li., et al 2023). Furthermore, the ecosystem activities impact the habitats of microorganisms, particularly fungi, which live or even associate with such habitats. The dynamics of forests span over a wide range of time periods, from short-term incidences during seasonal ecosystem dynamics to the long-term stand growth following disturbances including fires or insect outbreaks (Baldrian, 2017). Identifying these mechanisms require in-depth investigations of the microbiome and its functioning through targeted, integrated microbiological and ecological research conducted across different environments. The research topic i.e., Forest soil microbiome and their interaction with plants, seeks integration of interdisciplinary study that promotes a mechanistic understanding of such biological activities in these natural ecosystems under fluctuating environmental conditions. The underlying concept is that microbes in forest soil are dynamic plant symbionts contributing towards growth promotion, in nutrient processing, and improving defense and resistance to environmental stresses.A paradigm shift may be seen in the articles collection compiled under this topic. Our understanding of forest soils is evolving from the simple chemical reactions to diverse biological interactions. One the most intriguing discoveries in this collection is the crucial third player in soil ecology i.e., soil virome in addition to bacteria and fungi, Their findings demonstrated that the seasonal fluctuations are not as effective as soil depth, which serves as a filter for microbial community building through soil layers.The strategies for conservation should take this variation into account. Notably, Qiao's study suggests that the subsurface contains unique microbial reservoirs that operate according to various ecological norms. The majority of soil sampling is limited to the topsoil (0-10 cm). The stability of deep soil microbiomes may serve as a buffer to maintain biodiversity and recolonize topsoil to sustain ecosystem functions when surface is perturbed by anthropogenic activities and/or any changing climatic condition such as rainfall and temperature.The stable existence of these microbial communities is being threatened by shifting precipitation patterns. Wang et al. ( 2025) contribution provides a warning about the forest soil's hydrological vulnerability. Through examining how Pinus yunnanensis microbiome react to rainfall variations, the authors found that varying moisture availability affects the complex balance between bacterial and fungal networks.Accordingly, fungi are the main decomposers of recalcitrant wood, which are very sensitive to moisture. The structure of microbial network may collapse or rearrange in response to shifts in rainfall patterns that result in prolonged droughts or more violent floods resulting in slowdown of nutrient cycling and obstructed tree development.At the root-soil interface i.e., rhizosphere, the most intimate interactions take place, for some of the most catastrophic plant diseases of the past such as the Irish Potato famine. Based on their investigation, Phytophthora and Phytopythium species are abundant in both wild and agricultural regions in Vietnam. For biosecurity, it is crucial to comprehend the global dissemination of these cryptic pathogens to forest with no prior exposure to these pathogens and therefore lack the co-evolved microbial defences when global trade moves soil and plant material across borders (Lovett, 2016).These findings not only improve our basic understanding of the diversity and functions of the forest soil microbiome but also provide the groundwork for integrating microbial ecology into practical approaches for the forest management and conservation. For instance, understanding how soil microbial networks get impacted by rainfall patterns and climate change could potentially guide responsive forest management in the context of changing climate conditions. Comprehending the feedbacks between plants and forest soil also offers possibilities to utilize favourable microbial interactions for improving plant health, disease resistance, and the resilience of ecosystem. As topic editors, we are pleased by the depth of the research contribution in this collection. These findings emphasize the significance of ongoing integrated research that involves field observations, functional omics, high resolution sequencing, and experimental manipulations to unravel the intricate relationship between forest plants and their related soil microbiome. We recommend readers to investigate these contributions in depth and engage with the emerging issues they raise. Ecosystem stability, plant health, and global biogeochemical cycling are all shaped by forest soil microbiome, which is more than just a background for ecological interactions. In order to address the future scientific and environmental concerns, it will be essential to continue investigating at these systems. The author(s) declare that no financial support was received for the research, authorship, and/or publication of this article.

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Publication Details

Journal
Frontiers in Microbiology
Published
2026-04-07
DOI
https://doi.org/10.3389/fmicb.2026.1819757
Primary Topic
Soil Carbon and Nitrogen Dynamics
Type
article
Field-Weighted Citation Impact
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article

Editorial: Forest soil microbiome and their interactions with the plants

Muneer Ahmed Qazi, Irfan Ali Phulpoto, Hesong Wang, Jie Yang
Frontiers in Microbiology
Soil Carbon and Nitrogen Dynamics
article

Editorial: Forest soil microbiome and their interactions with the plants

Muneer Ahmed Qazi, Irfan Ali Phulpoto, Hesong Wang, Jie Yang
article en

Abstract

Forests cover approx. 38 million km 2 of Earth's surface, and comprise billions of trees.In addition to food and timber production, the forest ecosystem also helps to sustain regional ecosystem services including reduction of carbon footprint and elemental biogeochemical cycling (Perry et al., 2008;Pan et al., 2011;Crowther., 2015;Li., et al 2023). Forests are extremely diverse ecosystems with a wide range of reactive interfaces mediated by microbes. These primarily include the root-soil, root-root, littersoil, and plant-atmosphere interfaces (Kim et al., 2012;Voříšková et al., 2014;Beckers et al., 2017). All these interfaces have distinct features, such as the factors influencing microbial diversity, microbial abundance of particular microbial species, and the nutritional availability (Li., et al 2023). Furthermore, the ecosystem activities impact the habitats of microorganisms, particularly fungi, which live or even associate with such habitats. The dynamics of forests span over a wide range of time periods, from short-term incidences during seasonal ecosystem dynamics to the long-term stand growth following disturbances including fires or insect outbreaks (Baldrian, 2017). Identifying these mechanisms require in-depth investigations of the microbiome and its functioning through targeted, integrated microbiological and ecological research conducted across different environments. The research topic i.e., Forest soil microbiome and their interaction with plants, seeks integration of interdisciplinary study that promotes a mechanistic understanding of such biological activities in these natural ecosystems under fluctuating environmental conditions. The underlying concept is that microbes in forest soil are dynamic plant symbionts contributing towards growth promotion, in nutrient processing, and improving defense and resistance to environmental stresses.A paradigm shift may be seen in the articles collection compiled under this topic. Our understanding of forest soils is evolving from the simple chemical reactions to diverse biological interactions. One the most intriguing discoveries in this collection is the crucial third player in soil ecology i.e., soil virome in addition to bacteria and fungi, Their findings demonstrated that the seasonal fluctuations are not as effective as soil depth, which serves as a filter for microbial community building through soil layers.The strategies for conservation should take this variation into account. Notably, Qiao's study suggests that the subsurface contains unique microbial reservoirs that operate according to various ecological norms. The majority of soil sampling is limited to the topsoil (0-10 cm). The stability of deep soil microbiomes may serve as a buffer to maintain biodiversity and recolonize topsoil to sustain ecosystem functions when surface is perturbed by anthropogenic activities and/or any changing climatic condition such as rainfall and temperature.The stable existence of these microbial communities is being threatened by shifting precipitation patterns. Wang et al. ( 2025) contribution provides a warning about the forest soil's hydrological vulnerability. Through examining how Pinus yunnanensis microbiome react to rainfall variations, the authors found that varying moisture availability affects the complex balance between bacterial and fungal networks.Accordingly, fungi are the main decomposers of recalcitrant wood, which are very sensitive to moisture. The structure of microbial network may collapse or rearrange in response to shifts in rainfall patterns that result in prolonged droughts or more violent floods resulting in slowdown of nutrient cycling and obstructed tree development.At the root-soil interface i.e., rhizosphere, the most intimate interactions take place, for some of the most catastrophic plant diseases of the past such as the Irish Potato famine. Based on their investigation, Phytophthora and Phytopythium species are abundant in both wild and agricultural regions in Vietnam. For biosecurity, it is crucial to comprehend the global dissemination of these cryptic pathogens to forest with no prior exposure to these pathogens and therefore lack the co-evolved microbial defences when global trade moves soil and plant material across borders (Lovett, 2016).These findings not only improve our basic understanding of the diversity and functions of the forest soil microbiome but also provide the groundwork for integrating microbial ecology into practical approaches for the forest management and conservation. For instance, understanding how soil microbial networks get impacted by rainfall patterns and climate change could potentially guide responsive forest management in the context of changing climate conditions. Comprehending the feedbacks between plants and forest soil also offers possibilities to utilize favourable microbial interactions for improving plant health, disease resistance, and the resilience of ecosystem. As topic editors, we are pleased by the depth of the research contribution in this collection. These findings emphasize the significance of ongoing integrated research that involves field observations, functional omics, high resolution sequencing, and experimental manipulations to unravel the intricate relationship between forest plants and their related soil microbiome. We recommend readers to investigate these contributions in depth and engage with the emerging issues they raise. Ecosystem stability, plant health, and global biogeochemical cycling are all shaped by forest soil microbiome, which is more than just a background for ecological interactions. In order to address the future scientific and environmental concerns, it will be essential to continue investigating at these systems. The author(s) declare that no financial support was received for the research, authorship, and/or publication of this article.

Frontiers in MicrobiologyVol. 17
China University of Geosciences (Beijing) (CN), Beijing Forestry University (CN), Shah Abdul Latif University (PK)
Life in Land
Openalex Percentile: Top 28%
Soil Carbon and Nitrogen Dynamics
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