General Biogeographic Rules and Lineage‐Specific History Shape the Assembly of Asian Tropical Megadiversity

ABSTRACT Aim Tropical Asia's extraordinary plant diversity is thought to be intrinsically linked to its dynamic geological history. However, quantifying the precise evolutionary processes that assembled this diversity across the archipelago remains challenging. A recently proposed biogeographic framework classifies the functional roles of different regions as “radiators,” “incubators,” “corridors” or “accumulators,” offering a useful framework to analyse this complexity. Here, we aim to provide a critical, independent test of this framework using the megadiverse tree genus Syzygium as a model system. Syzygium originated on the Sahul Shelf, contrasting with the Indochinese origin of rattan palms used in the original framework validation. Location Tropical Asia, Pacific Islands and Africa. Methods We analysed the complete chloroplast genome of 200 species of the genus Syzygium and performed phylogenetic analysis to estimate divergence times, ancestral region reconstruction, and estimated diversification and extinction rates. We then analysed the relationship between regional area and the dispersal of species and examined speciation and dispersal patterns in relation to the geographical environment. Results Our comprehensive chloroplast phylogenomic analysis indicates rapid diversification of Syzygium commencing ~12 million years ago, coinciding with shelf collision. Biogeographic reconstructions indicate that while the framework's general principles hold – continental shelf act as “radiators” and isolated islands as “incubators” – the specific geographic roles vary depend on lineage history . Main Conclusions Our study validates the radiator‐incubator model as a general feature of tropical Asian evolution but refines it by demonstrating that historical contingency is key to understanding the assembly of Earth's richest biota. Tropical Asian plant diversity reflects a unique geological history of continental shelf collision and dynamic island geography, offering insights into biodiversity evolution in other geologically active regions worldwide, highlighting the importance of maintaining large, connected natural areas and dispersal corridors for preserving the evolutionary processes that generate Earth's botanical richness.