Chromosome-level genome assembly of Rhynchium brunneum (Fabricius, 1787) (Hymenoptera: Vespidae)

The wasps of Rhynchium exemplify solitary vespid predators controlling Lepidopteran pests through venom-mediated paralysis, with their venom possessing significant medicinal potential. As dominant models within the species-rich subfamily Eumeninae representing 70% of Vespidae diversity, they provide critical insights into sociality evolution and biocontrol mechanisms. To boost research on Vespidae, we used PacBio long-read, short-read RNA-seq (Illumina) and Hi-C scaffolding technologies to create a high-quality chromosome-level genome assembly for Rhynchium brunneum, an important solitary insect. We obtained a 328.90 Mb assembly with a Scaffold N50 size of 15.98 Mb. We detected 96.2% Benchmarking Universal Single-Copy Orthologues (BUSCO) in the genome assembly, which contains 51.77% repetitive sequences and has 12,999 protein-coding genes annotated. In R. brunneum, we identified 173 gene expansions and 274 genes that underwent contraction or loss. The high-quality genome of R. brunneum provides a valuable genetic resource for future research in evolution, molecular biology, and applied studies.

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Publication Details

Journal
Scientific Data
Published
2026-04-03
DOI
https://doi.org/10.1038/s41597-026-07168-5
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
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article

Chromosome-level genome assembly of Rhynchium brunneum (Fabricius, 1787) (Hymenoptera: Vespidae)

TingJing Li, Yi-Xiang Wang, Shulin He, Bin Chen
Scientific Data
Genomics and Phylogenetic Studies
article

Chromosome-level genome assembly of Rhynchium brunneum (Fabricius, 1787) (Hymenoptera: Vespidae)

TingJing Li, Yi-Xiang Wang, Shulin He, Bin Chen
article en

Abstract

The wasps of Rhynchium exemplify solitary vespid predators controlling Lepidopteran pests through venom-mediated paralysis, with their venom possessing significant medicinal potential. As dominant models within the species-rich subfamily Eumeninae representing 70% of Vespidae diversity, they provide critical insights into sociality evolution and biocontrol mechanisms. To boost research on Vespidae, we used PacBio long-read, short-read RNA-seq (Illumina) and Hi-C scaffolding technologies to create a high-quality chromosome-level genome assembly for Rhynchium brunneum, an important solitary insect. We obtained a 328.90 Mb assembly with a Scaffold N50 size of 15.98 Mb. We detected 96.2% Benchmarking Universal Single-Copy Orthologues (BUSCO) in the genome assembly, which contains 51.77% repetitive sequences and has 12,999 protein-coding genes annotated. In R. brunneum, we identified 173 gene expansions and 274 genes that underwent contraction or loss. The high-quality genome of R. brunneum provides a valuable genetic resource for future research in evolution, molecular biology, and applied studies.

Scientific Data
Chongqing Normal University (CN)
Openalex Percentile: Top 24%
Genomics and Phylogenetic Studies
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