Structural analysis of <i>Helicobacter pylori</i> glutamate racemase in a monoclinic crystal form

Abstract Glutamate racemase (MurI) catalyzes the stereochemical interconversion of L-glutamate to D-glutamate, a key element of bacterial peptidoglycan biosynthesis. In this study, we present the crystal structure of Helicobacter pylori glutamate racemase at 1.43 Å and in monoclinic symmetry, as previously reported models, but different unit-cell parameters. The present model contains a single dimer and retains the previously described head-to-head dimer arrangement. The differences between the models arise from variations in unit-cell parameters, which lead to altered crystal packing interactions rather than changes in the quaternary assembly. The monomeric fold and active-site architecture remain conserved and are consistent with the catalytic features described for bacterial glutamate racemases. This structure provides an updated, high-resolution structural model for H. pylori glutamate racemase and highlights the variability in crystal packing within the same space group.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-04-03
DOI
https://doi.org/10.64898/2026.04.02.716094
Primary Topic
Enzyme Structure and Function
Type
article
Field-Weighted Citation Impact
0.00

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article

Structural analysis of Helicobacter pylori glutamate racemase in a monoclinic crystal form

Maria Spiliopoulou, Eike C. Schulz
bioRxiv (Cold Spring Harbor Laboratory)
Enzyme Structure and Function
article

Structural analysis of Helicobacter pylori glutamate racemase in a monoclinic crystal form

Maria Spiliopoulou, Eike C. Schulz
article en

Abstract

Abstract Glutamate racemase (MurI) catalyzes the stereochemical interconversion of L-glutamate to D-glutamate, a key element of bacterial peptidoglycan biosynthesis. In this study, we present the crystal structure of Helicobacter pylori glutamate racemase at 1.43 Å and in monoclinic symmetry, as previously reported models, but different unit-cell parameters. The present model contains a single dimer and retains the previously described head-to-head dimer arrangement. The differences between the models arise from variations in unit-cell parameters, which lead to altered crystal packing interactions rather than changes in the quaternary assembly. The monomeric fold and active-site architecture remain conserved and are consistent with the catalytic features described for bacterial glutamate racemases. This structure provides an updated, high-resolution structural model for H. pylori glutamate racemase and highlights the variability in crystal packing within the same space group.

bioRxiv (Cold Spring Harbor Laboratory)
Universität Hamburg (DE), University Medical Center Hamburg-Eppendorf (DE), Max Planck Institute for the Structure and Dynamics of Matter (DE)
Bundesministerium für Bildung, Wissenschaft und Forschung
Openalex Percentile: Top 26%
Enzyme Structure and Function
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