Toward accurate predictions of bond-selective fluorescence spectra

Vibrational-encoded fluorescence spectro-microscopies are emerging as powerful tools for studying molecular vibrations with the unparalleled sensitivity of fluorescence spectroscopy. We recently described one such technique, termed bond-selective fluorescence-detected infrared-excited (BonFIRE) spectro-microscopy. Currently, prospects of BonFIRE toward rational molecular design are limited, but they have the potential to be assisted by computational tools. In this perspective, we provide a brief overview of the theory of BonFIRE spectroscopy. We then describe a fully automated computational pipeline for calculating BonFIRE spectra, reproducing key features of experimental results. Finally, we highlight a few potential applications of computational methods for vibrational-encoded fluorescence spectro-microscopies and their broader implications for chemistry and biology.

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Publication Details

Journal
The Journal of Chemical Physics
Published
2026-04-03
DOI
https://doi.org/10.1063/5.0323289
Primary Topic
Advanced Fluorescence Microscopy Techniques
Type
article
Field-Weighted Citation Impact
0.00

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article

Toward accurate predictions of bond-selective fluorescence spectra

Noor Naji, Philip A. Kocheril, Jiajun Du, Dongkwan Lee et al.
The Journal of Chemical Physics
Advanced Fluorescence Microscopy Techniques
article

Toward accurate predictions of bond-selective fluorescence spectra

Noor Naji, Philip A. Kocheril, Jiajun Du, Dongkwan Lee, Haomin Wang, Ryan E. Leighton, Lu Wei
article en

Abstract

Vibrational-encoded fluorescence spectro-microscopies are emerging as powerful tools for studying molecular vibrations with the unparalleled sensitivity of fluorescence spectroscopy. We recently described one such technique, termed bond-selective fluorescence-detected infrared-excited (BonFIRE) spectro-microscopy. Currently, prospects of BonFIRE toward rational molecular design are limited, but they have the potential to be assisted by computational tools. In this perspective, we provide a brief overview of the theory of BonFIRE spectroscopy. We then describe a fully automated computational pipeline for calculating BonFIRE spectra, reproducing key features of experimental results. Finally, we highlight a few potential applications of computational methods for vibrational-encoded fluorescence spectro-microscopies and their broader implications for chemistry and biology.

The Journal of Chemical PhysicsVol. 164(13)
California Institute of Technology (US)
National Science Foundation, Alfred P. Sloan Foundation, Arnold and Mabel Beckman Foundation, Hertz Foundation, NIH Office of the Director, National Science Foundation Graduate Research Fellowship Program
Openalex Percentile: Top 22%
Advanced Fluorescence Microscopy Techniques
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