Analysis of morphological, morphokinetics, cell-free DNA, microRNAs parameters to predict aneuploidy status of embryos

BACKGROUND: In Vitro Fertilization (IVF) is one of the most effective infertility treatments. Preimplantation genetic testing for aneuploidy (PGT-A) is invasive, high-cost, and has the potential risk of embryo damage. Our study explores noninvasive approaches to assess embryo quality through morphology and morphokinetics and analyze miRNA, cell-free DNA (cfDNA) for embryo chromosomal status. METHODS: This cross-sectional study followed the STROBE guideline. We analysed the relationship between embryo morphology, morphokinetics, cfDNA, and microRNAs with the aneuploidy status of day-5 embryos at the blastocyst stage. Non-probability consecutive sampling yielded 124 embryos between 28th December 2021 and 31st December 2022 in our center. Model performance was evaluated using the area under the curve (AUC) from receiver operating characteristic (ROC) analysis. RESULTS: Of 124 embryos, 50.8% had aneuploid chromosomes. Analysis of ccfDNA demonstrated a significantly higher rate of aneuploidy from aneuploid embryos compared to the euploid group (p < 0.001). Morphokinetic parameters assessment showed longer pronuclear fading time (21.9 vs. 19.9 hours; p = 0.041) and shorter third cell cycle synchrony (13.4 vs. 17.5 hours; p = 0.036). The expression of miRNA-191 and miRNA-372 was higher in aneuploid compared to euploid embryos (8.1 fold, p < 0.001, and 6.5 fold, p = 0.008, respectively). ROC analysis revealed predictive values for miRNA-191 (AUC 0.745, sensitivity 73%, specificity 70.5%) and miRNA-372 (AUC 0.638, sensitivity 68.3%, specificity 55.7%). MiRNA-191, expansion category, and noninvasive PGT-A (niPGT-A) were identified as independent predictors of embryo ploidy status (p = 0.005). CONCLUSION: Embryo chromosomal status can be evaluated by integrating morphology, morphokinetics, miRNA-191, miRNA-372, and cell-free DNA.

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PLoS ONE
Published
2026-04-02
DOI
https://doi.org/10.1371/journal.pone.0344795
Primary Topic
Prenatal Screening and Diagnostics
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article
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article

Analysis of morphological, morphokinetics, cell-free DNA, microRNAs parameters to predict aneuploidy status of embryos

Achmad Kemal Harzif, Putri Nurbaeti, Hartanto Bayuaji, Retno Asti Werdhani et al.
PLoS ONE
Prenatal Screening and Diagnostics
article

Analysis of morphological, morphokinetics, cell-free DNA, microRNAs parameters to predict aneuploidy status of embryos

Achmad Kemal Harzif, Putri Nurbaeti, Hartanto Bayuaji, Retno Asti Werdhani, Pritta Ameilia Iffanolida, Azizah Fitriayu Andyra, Amalia Shadrina, Wisnu Jatmiko, Kresna Mutia, Dwi Anita Suryandari, Fistyanisa Elya Charilda, Ririn Rahmala Febri, Patricia Alika Kurniawan, Heidi Dewi Mutia, Thalia Amila Elsiyana, Intan Indah Permatasari, Budi Wiweko, Arief Boediono, Nafi’atul Ummah, R. Muharam Natadisastra
article en

Abstract

BACKGROUND: In Vitro Fertilization (IVF) is one of the most effective infertility treatments. Preimplantation genetic testing for aneuploidy (PGT-A) is invasive, high-cost, and has the potential risk of embryo damage. Our study explores noninvasive approaches to assess embryo quality through morphology and morphokinetics and analyze miRNA, cell-free DNA (cfDNA) for embryo chromosomal status. METHODS: This cross-sectional study followed the STROBE guideline. We analysed the relationship between embryo morphology, morphokinetics, cfDNA, and microRNAs with the aneuploidy status of day-5 embryos at the blastocyst stage. Non-probability consecutive sampling yielded 124 embryos between 28th December 2021 and 31st December 2022 in our center. Model performance was evaluated using the area under the curve (AUC) from receiver operating characteristic (ROC) analysis. RESULTS: Of 124 embryos, 50.8% had aneuploid chromosomes. Analysis of ccfDNA demonstrated a significantly higher rate of aneuploidy from aneuploid embryos compared to the euploid group (p < 0.001). Morphokinetic parameters assessment showed longer pronuclear fading time (21.9 vs. 19.9 hours; p = 0.041) and shorter third cell cycle synchrony (13.4 vs. 17.5 hours; p = 0.036). The expression of miRNA-191 and miRNA-372 was higher in aneuploid compared to euploid embryos (8.1 fold, p < 0.001, and 6.5 fold, p = 0.008, respectively). ROC analysis revealed predictive values for miRNA-191 (AUC 0.745, sensitivity 73%, specificity 70.5%) and miRNA-372 (AUC 0.638, sensitivity 68.3%, specificity 55.7%). MiRNA-191, expansion category, and noninvasive PGT-A (niPGT-A) were identified as independent predictors of embryo ploidy status (p = 0.005). CONCLUSION: Embryo chromosomal status can be evaluated by integrating morphology, morphokinetics, miRNA-191, miRNA-372, and cell-free DNA.

PLoS ONEVol. 21(4)
IPB University (ID), University of Indonesia (ID), Institute of Reproductive Medicine (IN), Rumah Sakit Umum Pusat Nasional Dr. Cipto Mangunkusumo (ID), Padjadjaran University (ID)
Openalex Percentile: Top 32%
Prenatal Screening and Diagnostics
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