End-point probability distributions of tethered polymers: Theory and Monte Carlo simulations in confined geometries

A combined theoretical and numerical study of end-point probability distributions [P(x)] and [P(y)] for a polymer tethered inside a cylindrical confinement is presented here. Analytical solutions of the diffusion equation (Fourier series and image methods) are benchmarked against large-scale Monte Carlo simulations of three canonical polymer architectures: the Freely Jointed Chain (FJC), Self-Avoiding Walk (SAW), and Worm-Like Chain (WLC). To overcome the severe sampling attrition for off-lattice SAW in confinement, a chain-length-adaptive hybrid sampling strategy has been developed by employing kinetic growth for short chains, an enhanced pruned-enriched Rosenbluth method in the crossover regime, and an off-lattice pivot algorithm for long chains, all implemented with Numba JIT (Just-In-Time) acceleration to reach statistically converged ensembles. The agreement is excellent for the FJC vs the Fourier propagator, while the SAW and the WLC show systematic, model-specific departures driven by excluded volume and bending rigidity. Using information-theoretic (Kullback-Leibler), distributional (Kolmogorov-Smirnov, moments), and several other statistical metrics, three distinct regimes (short-chain, crossover, and long-chain saturation) have been identified. In addition, the longitudinal probability distribution has been analyzed for different parameter regimes, such as the location of the tethering point and persistence lengths. The work delivers a validated, multi-scale computational toolkit along with the development of a Streamlit-based interactive application for interpreting confined-polymer experiments and for selecting appropriate polymer models in biological and nanoconfined settings.

Authors

Institutions

Publication Details

Journal
The Journal of Chemical Physics
Published
2026-04-02
DOI
https://doi.org/10.1063/5.0316200
Primary Topic
Rheology and Fluid Dynamics Studies
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

End-point probability distributions of tethered polymers: Theory and Monte Carlo simulations in confined geometries

Bibhatsu Kuiri, Sonjoy Mondal, Soumyajyoti Kabi, Dipankar Biswas et al.
The Journal of Chemical Physics
Rheology and Fluid Dynamics Studies
article

End-point probability distributions of tethered polymers: Theory and Monte Carlo simulations in confined geometries

Bibhatsu Kuiri, Sonjoy Mondal, Soumyajyoti Kabi, Dipankar Biswas, Rittwick Mondal
article en

Abstract

A combined theoretical and numerical study of end-point probability distributions [P(x)] and [P(y)] for a polymer tethered inside a cylindrical confinement is presented here. Analytical solutions of the diffusion equation (Fourier series and image methods) are benchmarked against large-scale Monte Carlo simulations of three canonical polymer architectures: the Freely Jointed Chain (FJC), Self-Avoiding Walk (SAW), and Worm-Like Chain (WLC). To overcome the severe sampling attrition for off-lattice SAW in confinement, a chain-length-adaptive hybrid sampling strategy has been developed by employing kinetic growth for short chains, an enhanced pruned-enriched Rosenbluth method in the crossover regime, and an off-lattice pivot algorithm for long chains, all implemented with Numba JIT (Just-In-Time) acceleration to reach statistically converged ensembles. The agreement is excellent for the FJC vs the Fourier propagator, while the SAW and the WLC show systematic, model-specific departures driven by excluded volume and bending rigidity. Using information-theoretic (Kullback-Leibler), distributional (Kolmogorov-Smirnov, moments), and several other statistical metrics, three distinct regimes (short-chain, crossover, and long-chain saturation) have been identified. In addition, the longitudinal probability distribution has been analyzed for different parameter regimes, such as the location of the tethering point and persistence lengths. The work delivers a validated, multi-scale computational toolkit along with the development of a Streamlit-based interactive application for interpreting confined-polymer experiments and for selecting appropriate polymer models in biological and nanoconfined settings.

The Journal of Chemical PhysicsVol. 164(13)
Chandigarh University (IN), nLIGHT (United States) (US), Sidho-Kanho-Birsha University (IN), Manhattan High School (US), GLA University (IN)
Openalex Percentile: Top 29%
Rheology and Fluid Dynamics Studies
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.