<i>fastbioclim</i> : An R package for creating custom‐time bioclimatic and derived environmental summary variables

Abstract Bioclimatic variables, widely used in ecological and biogeographical studies, are typically derived from 30‐year averages of monthly data (e.g. 1971–2000). Unfortunately, the use of these long‐term averaged variables often creates a temporal mismatch with the observational data collected, which potentially undermines how environmental conditions at a specific time could influence ecological processes. For example, as global temperatures and precipitation patterns shift, relying on these averages can lead to inaccurate assessments of the environmental conditions, thus hindering the recognition of phenological events or species responses to recent climate change. While high‐resolution (e.g. months, weeks, days) time‐series data are available, a dedicated and efficient tool for generating variables over custom time intervals from them has been lacking. The fastbioclim R package addresses this gap by generating bioclimatic and derived environmental summary variables from supplied raster data for user‐defined timeframes. This efficient design accelerates large‐scale raster processing on standard personal computers. Key features allow users to select a subset of variables, define time periods beyond standard quarters and summarise data from finer time units such as weeks or days. Furthermore, fastbioclim extends the standard set of 19 variables by incorporating variables based on moisture and solar radiation (bio20–35) and by summarising other variables like wind speed, evapotranspiration or any other time‐series data available, using the same standardised methodology. The package's capabilities are demonstrated with two contrasting examples: the creation of a long‐term averaged, extended set of 35 bioclimatic variables for Mexico (2011–2020) and the generation of a time series of derived summary variables from cloud cover data for Madagascar. By streamlining the creation of temporally matched environmental variables, fastbioclim enhances the quality of environmental data for more temporally accurate ecological and biogeographical studies. This is particularly valuable for developing ecological models that incorporate the temporal dimension and for enhancing the understanding of how environmental conditions drive specific biological processes, including, but not limited to, the assessment of species' vulnerability to recent climate shifts.

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Publication Details

Journal
Methods in Ecology and Evolution
Published
2026-04-01
DOI
https://doi.org/10.1111/2041-210x.70291
Citations
1
Primary Topic
Species Distribution and Climate Change
Type
article
Field-Weighted Citation Impact
18.55

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article

fastbioclim : An R package for creating custom‐time bioclimatic and derived environmental summary variables

Gonzalo E. Pinilla‐Buitrago, Luis Osorio‐Olvera
1 citations
Methods in Ecology and Evolution
Species Distribution and Climate Change
18.55
article

fastbioclim : An R package for creating custom‐time bioclimatic and derived environmental summary variables

Gonzalo E. Pinilla‐Buitrago, Luis Osorio‐Olvera
article en
1 citations

Abstract

Abstract Bioclimatic variables, widely used in ecological and biogeographical studies, are typically derived from 30‐year averages of monthly data (e.g. 1971–2000). Unfortunately, the use of these long‐term averaged variables often creates a temporal mismatch with the observational data collected, which potentially undermines how environmental conditions at a specific time could influence ecological processes. For example, as global temperatures and precipitation patterns shift, relying on these averages can lead to inaccurate assessments of the environmental conditions, thus hindering the recognition of phenological events or species responses to recent climate change. While high‐resolution (e.g. months, weeks, days) time‐series data are available, a dedicated and efficient tool for generating variables over custom time intervals from them has been lacking. The fastbioclim R package addresses this gap by generating bioclimatic and derived environmental summary variables from supplied raster data for user‐defined timeframes. This efficient design accelerates large‐scale raster processing on standard personal computers. Key features allow users to select a subset of variables, define time periods beyond standard quarters and summarise data from finer time units such as weeks or days. Furthermore, fastbioclim extends the standard set of 19 variables by incorporating variables based on moisture and solar radiation (bio20–35) and by summarising other variables like wind speed, evapotranspiration or any other time‐series data available, using the same standardised methodology. The package's capabilities are demonstrated with two contrasting examples: the creation of a long‐term averaged, extended set of 35 bioclimatic variables for Mexico (2011–2020) and the generation of a time series of derived summary variables from cloud cover data for Madagascar. By streamlining the creation of temporally matched environmental variables, fastbioclim enhances the quality of environmental data for more temporally accurate ecological and biogeographical studies. This is particularly valuable for developing ecological models that incorporate the temporal dimension and for enhancing the understanding of how environmental conditions drive specific biological processes, including, but not limited to, the assessment of species' vulnerability to recent climate shifts.

Methods in Ecology and EvolutionVol. 17(5)
Autonomous University of Yucatán (MX), Instituto Nacional de Pediatria (MX)
Universidad Nacional Autónoma de México, Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México
Climate action
Openalex Percentile: Top 1%
Species Distribution and Climate Change
18.55
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