Crystal Structure Prediction of a Low‐Symmetry Molecular Crystal (P1, Z = Z′ = 1) Using Periodic DFT and Cubic Starting Cells: A Case Study on 1‐{4‐[(prop‐2‐yn‐1‐yl)oxy]phenyl}ethan‐1‐one

ABSTRACT Predicting the crystal structure of low‐symmetry molecular crystals without experimental input is a challenging task, especially for systems with space group P1 and a single molecule in the unit cell ( Z = Z′ = 1). In this study, we explore a simple yet effective crystal structure prediction (CSP) strategy using periodic density functional theory (DFT) with the PBE functional and three dispersion corrections—Tkatchenko–Scheffler (TS), Many‐Body Dispersion (MBD * ), and DFT‐D4. As a case study, we investigate 1‐{4‐[(prop‐2‐yn‐1‐yl)oxy]phenyl}ethan‐1‐one, a molecule with four conformations and an experimental crystal structure (CCDC refcode ZOWZAP). Each conformation was placed in a cubic unit cell with varying initial edge lengths and fully optimized in CASTEP using the LBFGS minimizer, allowing simultaneous relaxation of lattice parameters and atomic coordinates. Results show that the choice of dispersion correction and initial cell dimensions critically influences prediction success. The DFT‐D4 method provided the closest agreement with the experimental structure, correctly identifying the experimentally observed conformation as the lowest‐energy arrangement in most cases. The study highlights the feasibility of a minimal‐input CSP workflow for P1 , Z = Z′ = 1 molecular crystals, offering a reproducible approach for systems where experimental diffraction data are unavailable or challenging to obtain.

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Publication Details

Journal
Crystal Research and Technology
Published
2026-03-31
DOI
https://doi.org/10.1002/crat.70093
Primary Topic
Crystallography and molecular interactions
Type
article
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article

Crystal Structure Prediction of a Low‐Symmetry Molecular Crystal (P1, Z = Z′ = 1) Using Periodic DFT and Cubic Starting Cells: A Case Study on 1‐{4‐[(prop‐2‐yn‐1‐yl)oxy]phenyl}ethan‐1‐one

Dariusz Maciej Pisklak, Łukasz Szeleszczuk
Crystal Research and Technology
Crystallography and molecular interactions
article

Crystal Structure Prediction of a Low‐Symmetry Molecular Crystal (P1, Z = Z′ = 1) Using Periodic DFT and Cubic Starting Cells: A Case Study on 1‐{4‐[(prop‐2‐yn‐1‐yl)oxy]phenyl}ethan‐1‐one

Dariusz Maciej Pisklak, Łukasz Szeleszczuk
article en

Abstract

ABSTRACT Predicting the crystal structure of low‐symmetry molecular crystals without experimental input is a challenging task, especially for systems with space group P1 and a single molecule in the unit cell ( Z = Z′ = 1). In this study, we explore a simple yet effective crystal structure prediction (CSP) strategy using periodic density functional theory (DFT) with the PBE functional and three dispersion corrections—Tkatchenko–Scheffler (TS), Many‐Body Dispersion (MBD * ), and DFT‐D4. As a case study, we investigate 1‐{4‐[(prop‐2‐yn‐1‐yl)oxy]phenyl}ethan‐1‐one, a molecule with four conformations and an experimental crystal structure (CCDC refcode ZOWZAP). Each conformation was placed in a cubic unit cell with varying initial edge lengths and fully optimized in CASTEP using the LBFGS minimizer, allowing simultaneous relaxation of lattice parameters and atomic coordinates. Results show that the choice of dispersion correction and initial cell dimensions critically influences prediction success. The DFT‐D4 method provided the closest agreement with the experimental structure, correctly identifying the experimentally observed conformation as the lowest‐energy arrangement in most cases. The study highlights the feasibility of a minimal‐input CSP workflow for P1 , Z = Z′ = 1 molecular crystals, offering a reproducible approach for systems where experimental diffraction data are unavailable or challenging to obtain.

Crystal Research and TechnologyVol. 61(4)
Medical University of Warsaw (PL)
Affordable and clean energy
Openalex Percentile: Top 33%
Crystallography and molecular interactions
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Crystal Structure Prediction of a Low‐Symmetry Molecular Crystal (P1, Z = Z′ = 1) Using Periodic DFT and Cubic Starting Cells: A Case Study on 1‐{4‐[(prop‐2‐yn‐1‐yl)oxy]phenyl}ethan‐1‐one — Dariusz Maciej Pisklak, Łukasz Szeleszczuk · Crystal Research and Technology (2026) | TGRS Research Map | TGRS