Protocol for culture, drug treatment, and dissociation of patient-derived 3D ovarian cancer microspheroids for flow cytometry

Single-cell technologies provide insights into tumor heterogeneity and treatment response. Here, we present a protocol to culture patient-derived ovarian tumor cells as 3D microspheroids. We describe steps for preparing multi-well dishes and isolating ovarian tumor cells for spheroid generation and culture. We then detail procedures for drug treatment, recovery, and dissociation of spheroids followed by single-cell analysis via flow cytometry. This scalable and cost-efficient protocol largely preserves the cellular composition of the original material.

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Publication Details

Journal
STAR Protocols
Published
2026-03-31
DOI
https://doi.org/10.1016/j.xpro.2026.104480
Primary Topic
Single-cell and spatial transcriptomics
Type
article
Field-Weighted Citation Impact
0.00

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article

Protocol for culture, drug treatment, and dissociation of patient-derived 3D ovarian cancer microspheroids for flow cytometry

Mariam Haffa, Ulrika Joneborg, Rita Ötvös, Karolina Juhani et al.
STAR Protocols
Single-cell and spatial transcriptomics
article

Protocol for culture, drug treatment, and dissociation of patient-derived 3D ovarian cancer microspheroids for flow cytometry

Mariam Haffa, Ulrika Joneborg, Rita Ötvös, Karolina Juhani, Emelie Wallin, Josefin Fernebro, Olli-Pekka Kallioniemi, Greta Gudoityte, Brinton Seashore-Ludlow
article en

Abstract

Single-cell technologies provide insights into tumor heterogeneity and treatment response. Here, we present a protocol to culture patient-derived ovarian tumor cells as 3D microspheroids. We describe steps for preparing multi-well dishes and isolating ovarian tumor cells for spheroid generation and culture. We then detail procedures for drug treatment, recovery, and dissociation of spheroids followed by single-cell analysis via flow cytometry. This scalable and cost-efficient protocol largely preserves the cellular composition of the original material.

STAR ProtocolsVol. 7(2)
Karolinska University Hospital (SE), Science for Life Laboratory (SE), Karolinska Institutet (SE), Institute for Molecular Medicine Finland (FI)
Vetenskapsrådet, Deutsche Krebshilfe, Radiumhemmets Forskningsfonder, Science for Life Laboratory
Good health and well-being
Openalex Percentile: Top 28%
Single-cell and spatial transcriptomics
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Protocol for culture, drug treatment, and dissociation of patient-derived 3D ovarian cancer microspheroids for flow cytometry — Mariam Haffa, Ulrika Joneborg, et al. · STAR Protocols (2026) | TGRS Research Map | TGRS