A Contrastive-Learning-Based Pre-Training Framework for Optical Property Prediction of Low-Data Rhodamines with Interpretable Multitask Graph Neural Networks

, respectively, outperforming machine learning, single-task, and no-pre-training GNN baselines. External dataset tests and comparisons with theoretical calculations reveal the superiority of our proposed model. Then, attention-based interpretability identifies chemically meaningful regions, including the conjugated backbone and amino substituents, which is consistent with the known photophysical mechanisms. Finally, we designed three new rhodamine derivatives exhibiting high Stokes shifts, with minimum 9 nm deviation between predicted and experimental values. These findings demonstrate that this framework enables accurate fluorescence property prediction and mechanism-informed molecular design, offering a promising theoretical guide for designing next-generation probes.

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Publication Details

Journal
Molecules
Published
2026-03-31
DOI
https://doi.org/10.3390/molecules31071149
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
0.00

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article

A Contrastive-Learning-Based Pre-Training Framework for Optical Property Prediction of Low-Data Rhodamines with Interpretable Multitask Graph Neural Networks

Xuemei Pu, Yanling Wu, Jiangguo Qiu, Yanzhi Guo et al.
Molecules
Computational Drug Discovery Methods
article

A Contrastive-Learning-Based Pre-Training Framework for Optical Property Prediction of Low-Data Rhodamines with Interpretable Multitask Graph Neural Networks

Xuemei Pu, Yanling Wu, Jiangguo Qiu, Yanzhi Guo, Hong Zhang, Menglong Li
article en

Abstract

, respectively, outperforming machine learning, single-task, and no-pre-training GNN baselines. External dataset tests and comparisons with theoretical calculations reveal the superiority of our proposed model. Then, attention-based interpretability identifies chemically meaningful regions, including the conjugated backbone and amino substituents, which is consistent with the known photophysical mechanisms. Finally, we designed three new rhodamine derivatives exhibiting high Stokes shifts, with minimum 9 nm deviation between predicted and experimental values. These findings demonstrate that this framework enables accurate fluorescence property prediction and mechanism-informed molecular design, offering a promising theoretical guide for designing next-generation probes.

MoleculesVol. 31(7)
Sichuan University (CN), West China Hospital of Sichuan University (CN)
National Natural Science Foundation of China
Openalex Percentile: Top 32%
Computational Drug Discovery Methods
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