Biosynthesis of Indole-3-Acetic Acid in <i>Escherichia coli</i> via Engineered Amidase

Indole-3-acetic acid (IAA) is a vital plant hormone, yet its natural synthesis is insufficient to meet agricultural demand. The indole-3-acetamide (IAM) pathway offers a promising route for microbial IAA production but suffers from inefficient amidase activity. In this study, we identified and engineered an amidase (RsAD) from <i>Rhodococcus</i> sp. through structural analysis, which revealed a narrow substrate channel limiting IAM access, followed by targeted mutagenesis to generate the optimized mutant RsAD-L447A. This mutant exhibited a 3.1-fold increase in catalytic efficiency (<i>k</i><sub>cat</sub>/<i>K</i><sub>m</sub>) and enabled complete IAM hydrolysis without the accumulation of intermediates. Coexpression of RsAD-L447A with l-tryptophan monooxygenase established a cascade pathway for IAA synthesis in <i>Escherichia coli</i>. Blocking the competing <i>tnaA</i>-mediated degradation pathway further improved precursor utilization. As a result, IAA production reached 13.3 from 20 g/L l-tryptophan in shake-flask cultures. These findings demonstrate an effective enzyme engineering and metabolic optimization strategy for high-level IAA biosynthesis.

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Journal
Journal of Agricultural and Food Chemistry
Published
2026-03-27
DOI
https://doi.org/10.1021/acs.jafc.5c13683
Primary Topic
Enzyme Catalysis and Immobilization
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article
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article

Biosynthesis of Indole-3-Acetic Acid in Escherichia coli via Engineered Amidase

Jeffrey S. Ren, Guangyue Li, Jingjing Yuan, Ce Jiang et al.
Journal of Agricultural and Food Chemistry
Enzyme Catalysis and Immobilization
article

Biosynthesis of Indole-3-Acetic Acid in Escherichia coli via Engineered Amidase

Jeffrey S. Ren, Guangyue Li, Jingjing Yuan, Ce Jiang, Xingyu Hou
article en

Abstract

Indole-3-acetic acid (IAA) is a vital plant hormone, yet its natural synthesis is insufficient to meet agricultural demand. The indole-3-acetamide (IAM) pathway offers a promising route for microbial IAA production but suffers from inefficient amidase activity. In this study, we identified and engineered an amidase (RsAD) from <i>Rhodococcus</i> sp. through structural analysis, which revealed a narrow substrate channel limiting IAM access, followed by targeted mutagenesis to generate the optimized mutant RsAD-L447A. This mutant exhibited a 3.1-fold increase in catalytic efficiency (<i>k</i><sub>cat</sub>/<i>K</i><sub>m</sub>) and enabled complete IAM hydrolysis without the accumulation of intermediates. Coexpression of RsAD-L447A with l-tryptophan monooxygenase established a cascade pathway for IAA synthesis in <i>Escherichia coli</i>. Blocking the competing <i>tnaA</i>-mediated degradation pathway further improved precursor utilization. As a result, IAA production reached 13.3 from 20 g/L l-tryptophan in shake-flask cultures. These findings demonstrate an effective enzyme engineering and metabolic optimization strategy for high-level IAA biosynthesis.

Journal of Agricultural and Food Chemistry
Nankai University (CN), Shanghai Pesticide Research Institute (CN), Chinese Academy of Agricultural Sciences (CN), Ministry of Agriculture (CZ)
Zero hunger
Openalex Percentile: Top 6%
Enzyme Catalysis and Immobilization
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Biosynthesis of Indole-3-Acetic Acid in <i>Escherichia coli</i> via Engineered Amidase — Jeffrey S. Ren, Guangyue Li, et al. · Journal of Agricultural and Food Chemistry (2026) | TGRS Research Map | TGRS