Systematic Detection of Oxford Nanopore Adapter and Barcode Contamination in GenBank – Data and Code Release

This Zenodo record is versioned. The DOI provided corresponds to the concept DOI and always resolves to the most recent version of the dataset that contains the full data and code release for “Systematic Detection of Oxford Nanopore Adapter and Barcode Contamination in GenBank”. It includes the non-redundant catalogue of 229 ONT adapter/barcode sequences, filtered BLAST hit tables, accession-level annotations, and summary presence matrices, together with scripts to reproduce all analyses and generate the consolidated Excel outputs. The source code is also available on GitHub at https://github.com/MERIDAIN-Lab/ONT_NCBI_contamination.

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-03-21
DOI
https://doi.org/10.5281/zenodo.19238758
Primary Topic
Bacteriophages and microbial interactions
Type
article
Field-Weighted Citation Impact
0.00
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article

Systematic Detection of Oxford Nanopore Adapter and Barcode Contamination in GenBank – Data and Code Release

Florencia Martino
Zenodo (CERN European Organization for Nuclear Research)
Bacteriophages and microbial interactions
article

Systematic Detection of Oxford Nanopore Adapter and Barcode Contamination in GenBank – Data and Code Release

Florencia Martino
article en

Abstract

This Zenodo record is versioned. The DOI provided corresponds to the concept DOI and always resolves to the most recent version of the dataset that contains the full data and code release for “Systematic Detection of Oxford Nanopore Adapter and Barcode Contamination in GenBank”. It includes the non-redundant catalogue of 229 ONT adapter/barcode sequences, filtered BLAST hit tables, accession-level annotations, and summary presence matrices, together with scripts to reproduce all analyses and generate the consolidated Excel outputs. The source code is also available on GitHub at https://github.com/MERIDAIN-Lab/ONT_NCBI_contamination.

Zenodo (CERN European Organization for Nuclear Research)
Openalex Percentile: Top 9%
Bacteriophages and microbial interactions
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