Piperacillin-tazobactam resistance in <i>Klebsiella pneumoniae</i> is often associated with IS <i>26-</i> mediated <i>bla</i> <sub>SHV-1</sub> amplification in a widespread <i>Klebsiella</i> -adapted plasmid

Piperacillin-tazobactam (TZP) resistance in <i>Klebsiella pneumoniae</i> involves diverse mechanisms with unclear prevalence and phenotypic impact. To elucidate these mechanisms, we analyzed <i>K. pneumoniae</i> clinical isolates resistant to TZP but susceptible to cefotaxime and cefepime. Among 53 isolates, 14 were further studied by MIC testing for TZP, amoxicillin-clavulanic acid (AMC), and ceftazidime (CAZ). Short-read sequencing was performed for all 14 isolates and long-read sequencing for two. Core-genome MLST showed that all were unrelated. Two had a <i>bla</i><sub>OXA-1</sub> gene, one also carrying an <i>ompK35</i> porin gene mutation; two others had the same mutation in the promoter of the chromosomal copy of <i>bla</i><sub>SHV</sub> usually associated with overexpression. In the remaining 10, resistance correlated with plasmid-borne <i>bla</i><sub>SHV-1</sub> copies. Nine isolates carried <i>bla</i><sub>SHV-1v1</sub> in the same IS<i>26</i> pseudocompound transposon (PTn), corresponding to PTnSHV-L and located on a conserved IncFIB(K)_1_Kpn3 plasmid in eight. The tenth isolate carried PTnSHV-L with a distinct <i>bla</i><sub>SHV-1</sub> variant on both an IncHI1B_1_pNDM-MAR plasmid and a high-copy-number Col-type plasmid. Read depth analysis confirmed that <i>bla</i><sub>SHV</sub> copy number correlated with TZP, AMC, and CAZ MICs. Large-scale database screening identified related IncFIB(K)_1_Kpn3 plasmids, strongly associated with <i>K. pneumoniae</i> and frequently carrying a PTnSHV-L marker. Analysis of a <i>K. pneumoniae</i> genome data set confirmed the frequent co-occurrence of this plasmid and the PTnSHV-L marker in strains with multiple <i>bla</i><sub>SHV</sub> copies. These findings suggest the emergence of an epidemic plasmid adapted to <i>K. pneumoniae</i> and driving TZP resistance through <i>bla</i><sub>SHV-1</sub> amplification, underscoring the need for genomic surveillance to detect amplification-based resistance overlooked by standard phenotypic or PCR assays.

Publication Details

Journal
Antimicrobial Agents and Chemotherapy
Published
2026-03-24
DOI
https://doi.org/10.1128/aac.01682-25
Primary Topic
Antibiotic Resistance in Bacteria
Type
article
Field-Weighted Citation Impact
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article

Piperacillin-tazobactam resistance in Klebsiella pneumoniae is often associated with IS 26- mediated bla SHV-1 amplification in a widespread Klebsiella -adapted plasmid

Antimicrobial Agents and Chemotherapy
Antibiotic Resistance in Bacteria
article

Piperacillin-tazobactam resistance in Klebsiella pneumoniae is often associated with IS 26- mediated bla SHV-1 amplification in a widespread Klebsiella -adapted plasmid

article en

Abstract

Piperacillin-tazobactam (TZP) resistance in <i>Klebsiella pneumoniae</i> involves diverse mechanisms with unclear prevalence and phenotypic impact. To elucidate these mechanisms, we analyzed <i>K. pneumoniae</i> clinical isolates resistant to TZP but susceptible to cefotaxime and cefepime. Among 53 isolates, 14 were further studied by MIC testing for TZP, amoxicillin-clavulanic acid (AMC), and ceftazidime (CAZ). Short-read sequencing was performed for all 14 isolates and long-read sequencing for two. Core-genome MLST showed that all were unrelated. Two had a <i>bla</i><sub>OXA-1</sub> gene, one also carrying an <i>ompK35</i> porin gene mutation; two others had the same mutation in the promoter of the chromosomal copy of <i>bla</i><sub>SHV</sub> usually associated with overexpression. In the remaining 10, resistance correlated with plasmid-borne <i>bla</i><sub>SHV-1</sub> copies. Nine isolates carried <i>bla</i><sub>SHV-1v1</sub> in the same IS<i>26</i> pseudocompound transposon (PTn), corresponding to PTnSHV-L and located on a conserved IncFIB(K)_1_Kpn3 plasmid in eight. The tenth isolate carried PTnSHV-L with a distinct <i>bla</i><sub>SHV-1</sub> variant on both an IncHI1B_1_pNDM-MAR plasmid and a high-copy-number Col-type plasmid. Read depth analysis confirmed that <i>bla</i><sub>SHV</sub> copy number correlated with TZP, AMC, and CAZ MICs. Large-scale database screening identified related IncFIB(K)_1_Kpn3 plasmids, strongly associated with <i>K. pneumoniae</i> and frequently carrying a PTnSHV-L marker. Analysis of a <i>K. pneumoniae</i> genome data set confirmed the frequent co-occurrence of this plasmid and the PTnSHV-L marker in strains with multiple <i>bla</i><sub>SHV</sub> copies. These findings suggest the emergence of an epidemic plasmid adapted to <i>K. pneumoniae</i> and driving TZP resistance through <i>bla</i><sub>SHV-1</sub> amplification, underscoring the need for genomic surveillance to detect amplification-based resistance overlooked by standard phenotypic or PCR assays.

Antimicrobial Agents and Chemotherapy
Openalex Percentile: Top 9%
Antibiotic Resistance in Bacteria
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