TaoChongBao: a large-scale <i>C. elegans</i> missense variant database bridging worm and human genomes

We generated and sequenced 12,069 viable <i>Caenorhabditis elegans</i> strains produced by ethyl methanesulfonate mutagenesis, identifying 20,315,536 variants, including 541,102 unique missense mutations across 20,914 genes. Most strains exhibit resistance to the anti-nematode drug ivermectin, whereas some others display phenotypes like dumpy morphology, uncoordinated movement, multivulva formation, and blistered cuticle. To organize and visualize this resource, we developed TaoChongBao, an open-access database and strain repository that integrates <i>C. elegans</i> mutation data with AlphaMissense-predicted pathogenicity scores and ClinVar clinical annotations. TaoChongBao enables users to explore worm missense variants, identify conserved residues corresponding to human pathogenic sites, and access viable strains for experimental validation. Compared with the previous Million Mutation Project in <i>C. elegans</i>, TaoChongBao expands mutation coverage over 20-fold and emphasizes amino acid-altering variants. This resource provides a scalable platform for functional residuomics, variant interpretation, and comparative analyses between <i>C. elegans</i> and human genomes.

Institutions

Publication Details

Journal
Life Science Alliance
Published
2026-03-23
DOI
https://doi.org/10.26508/lsa.202603631
Primary Topic
Genetics, Aging, and Longevity in Model Organisms
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

TaoChongBao: a large-scale C. elegans missense variant database bridging worm and human genomes

Life Science Alliance
Genetics, Aging, and Longevity in Model Organisms
article

TaoChongBao: a large-scale C. elegans missense variant database bridging worm and human genomes

article en

Abstract

We generated and sequenced 12,069 viable <i>Caenorhabditis elegans</i> strains produced by ethyl methanesulfonate mutagenesis, identifying 20,315,536 variants, including 541,102 unique missense mutations across 20,914 genes. Most strains exhibit resistance to the anti-nematode drug ivermectin, whereas some others display phenotypes like dumpy morphology, uncoordinated movement, multivulva formation, and blistered cuticle. To organize and visualize this resource, we developed TaoChongBao, an open-access database and strain repository that integrates <i>C. elegans</i> mutation data with AlphaMissense-predicted pathogenicity scores and ClinVar clinical annotations. TaoChongBao enables users to explore worm missense variants, identify conserved residues corresponding to human pathogenic sites, and access viable strains for experimental validation. Compared with the previous Million Mutation Project in <i>C. elegans</i>, TaoChongBao expands mutation coverage over 20-fold and emphasizes amino acid-altering variants. This resource provides a scalable platform for functional residuomics, variant interpretation, and comparative analyses between <i>C. elegans</i> and human genomes.

Life Science AllianceVol. 9(6)
McGovern Institute for Brain Research (US), Ministry of Education (KR), Chinese Institute for Brain Research (CN), Membrane Technology & Research (United States) (US), Center for Life Sciences (CN), State Key Laboratory of Membrane Biology, Tsinghua University (CN)
Openalex Percentile: Top 13%
Genetics, Aging, and Longevity in Model Organisms
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

TaoChongBao: a large-scale <i>C. elegans</i> missense variant database bridging worm and human genomes · Life Science Alliance (2026) | TGRS Research Map | TGRS