Natural variation in the <i>ORL4</i> promoter regulates rice leaf rolling to modulate leaf architecture and yield

Rice (Oryza sativa L.) leaf rolling enhances canopy architecture and photosynthetic efficiency, thereby improving yield potential. Through genome-wide association studies (GWAS) of 802 Xian and Geng rice accessions, we identified 32 loci associated with the leaf rolling index (LRI) and characterized OUTWARD ROLLED LEAF 4 (ORL4) as a regulatory gene from natural germplasm. CRISPR/Cas9-mediated knockout of ORL4 resulted in abaxially rolled leaves, driven by excessive bulliform cell proliferation and disrupted vascular patterning. A promoter variant (Chr04_19562737-C/T) modulates ORL4 expression by altering the binding affinity of the transcription factor RICE OUTERMOST CELL-SPECIFIC 8 (ROC8). Carriers of the ORL4C allele exhibit stronger ROC8 binding, higher ORL4 expression, and adaxially rolled or flat leaves; ORL4T carriers show the opposite phenotype. ORL4 forms a ternary complex with ROC8 and TOPLESS-RELATED PROTEIN 2(TPL2) to suppress ABAXIALLY CURLED LEAF 1(ACL1), a positive regulator of bulliform cell differentiation. Evolutionary analyses indicated that the ORL4C and ORL4T alleles originated from O. nivara and O. rufipogon, with ORL4C favored in Geng and ORL4T in Xian during domestication. Promoter editing of ORL4 in the elite cultivar 'Shennong 89-366' generated lines with enhanced LRI, achieving a significant yield increase in field trials. This study elucidates the genetic and molecular basis of leaf rolling and provides a promising strategy for rice yield improvement via precise promoter editing.

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Journal
The Plant Cell
Published
2026-03-20
DOI
https://doi.org/10.1093/plcell/koag086
Primary Topic
Plant Molecular Biology Research
Type
article
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article

Natural variation in the ORL4 promoter regulates rice leaf rolling to modulate leaf architecture and yield

Z. H. Li, Qianfeng Hu, Zhijun Wu, X. K. Wang et al.
The Plant Cell
Plant Molecular Biology Research
article

Natural variation in the ORL4 promoter regulates rice leaf rolling to modulate leaf architecture and yield

Z. H. Li, Qianfeng Hu, Zhijun Wu, X. K. Wang, Bingxia Xu, Z. Y. Zhang, Jun Li, Ping Xu, Ruiqi Liu, Yong Zhao, Jiayi Xu, Lingling Ma, Wei J. Wang, Xuehan Qian, Junzhou Li, Jinjie Li, Jinyue Yang, Jinlong Li, Yinghua Pan, Hongliang Zhang, Quan Zhang, Zhiqi Ma, Lei Chen, Xingming Sun
article en

Abstract

Rice (Oryza sativa L.) leaf rolling enhances canopy architecture and photosynthetic efficiency, thereby improving yield potential. Through genome-wide association studies (GWAS) of 802 Xian and Geng rice accessions, we identified 32 loci associated with the leaf rolling index (LRI) and characterized OUTWARD ROLLED LEAF 4 (ORL4) as a regulatory gene from natural germplasm. CRISPR/Cas9-mediated knockout of ORL4 resulted in abaxially rolled leaves, driven by excessive bulliform cell proliferation and disrupted vascular patterning. A promoter variant (Chr04_19562737-C/T) modulates ORL4 expression by altering the binding affinity of the transcription factor RICE OUTERMOST CELL-SPECIFIC 8 (ROC8). Carriers of the ORL4C allele exhibit stronger ROC8 binding, higher ORL4 expression, and adaxially rolled or flat leaves; ORL4T carriers show the opposite phenotype. ORL4 forms a ternary complex with ROC8 and TOPLESS-RELATED PROTEIN 2(TPL2) to suppress ABAXIALLY CURLED LEAF 1(ACL1), a positive regulator of bulliform cell differentiation. Evolutionary analyses indicated that the ORL4C and ORL4T alleles originated from O. nivara and O. rufipogon, with ORL4C favored in Geng and ORL4T in Xian during domestication. Promoter editing of ORL4 in the elite cultivar 'Shennong 89-366' generated lines with enhanced LRI, achieving a significant yield increase in field trials. This study elucidates the genetic and molecular basis of leaf rolling and provides a promising strategy for rice yield improvement via precise promoter editing.

The Plant Cell
Guangxi Academy of Agricultural Science (CN), Beijing Academy of Agricultural and Forestry Sciences (CN), Sanya University (CN), Institute of Crop Sciences (CN), Henan Agricultural University (CN), China Agricultural University (CN)
Openalex Percentile: Top 12%
Plant Molecular Biology Research
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