<i>K</i> <sub>OC</sub> -WebPredictor: An Open-Access Tool for Prediction and Insights into Soil Sorption

The soil organic carbon–water partition coefficient (KOC) is a key determinant of the environmental mobility and persistence of organic contaminants. Experimental measurement of KOC is accurate but resource-intensive, limiting its availability for the vast chemical inventory in commerce. Here, we developed interpretable quantitative structure–activity relationship (QSAR) and quantitative Read-Across Structure–Activity Relationship (q-RASAR) models, along with machine learning (ML) approaches, to predict log KOC values using reproducible 1D and 2D molecular descriptors. The optimized multiple linear regression (MLR)-based QSAR model, built on 824 structurally diverse compounds and nine mechanistically relevant descriptors, achieved strong internal and external performance (R2 = 0.85, Q2LOO = 0.84, and Q2F1 = 0.84). Comparative statistical evaluation using paired t- and Wilcoxon signed-rank tests confirmed that the QSAR model significantly outperformed the q-RASAR variant (p < 0.05) in predictive accuracy and robustness. Mechanistic interpretation revealed that hydrophobicity, aromatic rigidity, and halogenation increase soil sorption, whereas polar or phosphorus-rich substituents promote mobility. Large-scale external screening of 7,612 chemicals from the U.S. EPA’s CPDat inventory showed 94% coverage within the applicability domain (AD), supporting data gap filling under regulatory frameworks. An open-access web tool, KOC-WebPredictor, was developed to deliver quantitative (QSAR-based) and qualitative (ML-based) predictions, with visualization taking AD into consideration. This integrated, interpretable platform provides a practical alternative to experimental assays for assessing soil–organic carbon interactions and prioritizing chemicals based on mobility potential.

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Publication Details

Journal
ACS Omega
Published
2026-03-17
DOI
https://doi.org/10.1021/acsomega.5c11696
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
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article

K OC -WebPredictor: An Open-Access Tool for Prediction and Insights into Soil Sorption

Sk Abdul Amin, Supratik Kar, Lu Li, Stefano Piotto
ACS Omega
Computational Drug Discovery Methods
article

K OC -WebPredictor: An Open-Access Tool for Prediction and Insights into Soil Sorption

Sk Abdul Amin, Supratik Kar, Lu Li, Stefano Piotto
article en

Abstract

The soil organic carbon–water partition coefficient (KOC) is a key determinant of the environmental mobility and persistence of organic contaminants. Experimental measurement of KOC is accurate but resource-intensive, limiting its availability for the vast chemical inventory in commerce. Here, we developed interpretable quantitative structure–activity relationship (QSAR) and quantitative Read-Across Structure–Activity Relationship (q-RASAR) models, along with machine learning (ML) approaches, to predict log KOC values using reproducible 1D and 2D molecular descriptors. The optimized multiple linear regression (MLR)-based QSAR model, built on 824 structurally diverse compounds and nine mechanistically relevant descriptors, achieved strong internal and external performance (R2 = 0.85, Q2LOO = 0.84, and Q2F1 = 0.84). Comparative statistical evaluation using paired t- and Wilcoxon signed-rank tests confirmed that the QSAR model significantly outperformed the q-RASAR variant (p < 0.05) in predictive accuracy and robustness. Mechanistic interpretation revealed that hydrophobicity, aromatic rigidity, and halogenation increase soil sorption, whereas polar or phosphorus-rich substituents promote mobility. Large-scale external screening of 7,612 chemicals from the U.S. EPA’s CPDat inventory showed 94% coverage within the applicability domain (AD), supporting data gap filling under regulatory frameworks. An open-access web tool, KOC-WebPredictor, was developed to deliver quantitative (QSAR-based) and qualitative (ML-based) predictions, with visualization taking AD into consideration. This integrated, interpretable platform provides a practical alternative to experimental assays for assessing soil–organic carbon interactions and prioritizing chemicals based on mobility potential.

ACS Omega
University of Salerno (IT), Kean University (US)
Openalex Percentile: Top 18%
Computational Drug Discovery Methods
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