Essential Oil and Hydroethanolic Extract of <i>Clinopodium serpyllifolium</i> subsp. <i>serpyllifolium</i> : Enzyme Inhibition, Antiproliferative, Antimicrobial, Antibiofilm and In Silico Insights

ABSTRACT The pharmacological profile of Clinopodium serpyllifolium subsp. serpyllifolium (CS) remains largely unexplored, deserving to be comprehensively investigated. In this regard, the present study was designed to investigate, for the first time, the phytochemical composition and biological activities of CS hydroethanolic extract (CSE) and essential oil (CSEO). The findings were further supported by in silico analyses. Briefly, the metabolite profiling was performed by LC‐ESI‐MS/MS and GC–MS/MS. Concerning in vitro assays, the inhibitory effects of the plant extracts on α‐amylase, α‐glucosidase and xanthine oxidase were assessed. The extracts were also tested for their anti‐inflammatory, antiproliferative (HepG2, SAOS‐2), antibacterial and antibiofilm activities. Additionally, to support the findings regarding biological activities, density functional theory (DFT), molecular docking, molecular dynamics simulations and free energy landscape analyses were employed for the major compounds identified. The findings of the present study revealed that CSEO exhibited potent α‐amylase, α‐glucosidase and xanthine oxidase inhibition. Importantly, CSEO showed superior activities over standard inhibitors. The selective antiproliferative activity of CSE and CSEO was observed in their treatment on hepatocellular carcinoma (HepG2) and osteosarcoma (SAOS‐2) cells, while the normal human umbilical vein endothelial cells (HUVEC) remained unaffected. Also, strong antibacterial and antibiofilm activities were observed, particularly against Pseudomonas aeruginosa and Staphylococcus aureus . Significantly, in silico analyses further confirmed the stable and favourable binding energies of menthone, pulegone and luteolin with target enzymes. Those findings were consistent with experimental findings. Taking all findings into account, the present study provides the first comprehensive evidence that CS might be considered as a promising natural source or candidate for enzyme inhibitors, antiproliferative, anti‐inflammatory and antimicrobial agents.

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Journal
Flavour and Fragrance Journal
Published
2026-03-16
DOI
https://doi.org/10.1002/ffj.70084
Primary Topic
Essential Oils and Antimicrobial Activity
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article
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article

Essential Oil and Hydroethanolic Extract of Clinopodium serpyllifolium subsp. serpyllifolium : Enzyme Inhibition, Antiproliferative, Antimicrobial, Antibiofilm and In Silico Insights

Yunus Başar, Muhittin Kulak, Ayşe Karacalı Tunç, Fatih Gül et al.
Flavour and Fragrance Journal
Essential Oils and Antimicrobial Activity
article

Essential Oil and Hydroethanolic Extract of Clinopodium serpyllifolium subsp. serpyllifolium : Enzyme Inhibition, Antiproliferative, Antimicrobial, Antibiofilm and In Silico Insights

Yunus Başar, Muhittin Kulak, Ayşe Karacalı Tunç, Fatih Gül, Tevfik Ozen, Ahmet Zafer Tel, Godloves F. Chi, Aslı Yıldırım Kocaman, Semiha Yenigun, Musa Karadag, Ibrahim Demirtas
article en

Abstract

ABSTRACT The pharmacological profile of Clinopodium serpyllifolium subsp. serpyllifolium (CS) remains largely unexplored, deserving to be comprehensively investigated. In this regard, the present study was designed to investigate, for the first time, the phytochemical composition and biological activities of CS hydroethanolic extract (CSE) and essential oil (CSEO). The findings were further supported by in silico analyses. Briefly, the metabolite profiling was performed by LC‐ESI‐MS/MS and GC–MS/MS. Concerning in vitro assays, the inhibitory effects of the plant extracts on α‐amylase, α‐glucosidase and xanthine oxidase were assessed. The extracts were also tested for their anti‐inflammatory, antiproliferative (HepG2, SAOS‐2), antibacterial and antibiofilm activities. Additionally, to support the findings regarding biological activities, density functional theory (DFT), molecular docking, molecular dynamics simulations and free energy landscape analyses were employed for the major compounds identified. The findings of the present study revealed that CSEO exhibited potent α‐amylase, α‐glucosidase and xanthine oxidase inhibition. Importantly, CSEO showed superior activities over standard inhibitors. The selective antiproliferative activity of CSE and CSEO was observed in their treatment on hepatocellular carcinoma (HepG2) and osteosarcoma (SAOS‐2) cells, while the normal human umbilical vein endothelial cells (HUVEC) remained unaffected. Also, strong antibacterial and antibiofilm activities were observed, particularly against Pseudomonas aeruginosa and Staphylococcus aureus . Significantly, in silico analyses further confirmed the stable and favourable binding energies of menthone, pulegone and luteolin with target enzymes. Those findings were consistent with experimental findings. Taking all findings into account, the present study provides the first comprehensive evidence that CS might be considered as a promising natural source or candidate for enzyme inhibitors, antiproliferative, anti‐inflammatory and antimicrobial agents.

Flavour and Fragrance Journal
University of Buea (CM), Ankara University (TR), Turku University of Applied Sciences (FI), Ondokuz Mayıs University (TR), Iğdır Üniversitesi (TR), Türkisch-Deutsche Universität (TR), Department of Health Services (NP)
Affordable and clean energy
Openalex Percentile: Top 18%
Essential Oils and Antimicrobial Activity
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