The saprotrophic dimension of Exobasidium (Exobasidiales, Basidiomycota): evidence for greater diversity and ecological flexibility than previously recognized

Fungi represent the largest group of plant pathogens, causing significant economic losses in agriculture and forestry worldwide. Species of the genus <i>Exobasidium</i> (<i>Exobasidiales</i>, <i>Basidiomycota</i>) are considered pathogens of plants from the order <i>Ericales</i>. While <i>Exobasidium</i> species notably impact tea and fruit production, their complete life cycles remain poorly understood, which hampers their management. These species are characterized by a dikaryotic parasitic stage tightly associated with living host tissues and a haploid, yeast-like saprotrophic stage. The prevalence, ecological significance, and potential contribution of this saprotrophic stage to the persistence of <i>Exobasidium</i> outside living host plants remain understudied. In this study, we confirmed the presence of several <i>Exobasidium</i> species in the leaf phyllosphere of five broad-leaved tree species in Central Europe using both cultivation and environmental DNA ITS2-based approaches. Additionally, we describe a new species without a known parasitic phase, <i>E. phylloplanum</i> <b>sp. nov</b>., along with its physiological description and annotated genome. Environmental DNA surveys, using the GlobalFungi database, revealed that <i>E. phylloplanum</i> is not only common locally but also the most frequently detected <i>Exobasidium</i> lineage worldwide. This broad ecological amplitude contrasts with the narrow host specificity typical of parasitic congeners, suggesting that <i>E. phylloplanum</i> has adapted to a generalist saprotrophic life-history strategy. Our findings demonstrate that <i>Exobasidium</i> species can persist saprotrophically on diverse hosts, suggesting a broader ecological role and higher diversity than previously recognized. This research elucidates the diverse ecological roles of <i>Exobasidium</i> species and suggests that further genomic studies could reveal the genetic factors that underpin the different life strategies within this genus.

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Journal
IMA Fungus
Published
2026-03-16
DOI
https://doi.org/10.3897/imafungus.17.180524
Primary Topic
Yeasts and Rust Fungi Studies
Type
article
Field-Weighted Citation Impact
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article

The saprotrophic dimension of Exobasidium (Exobasidiales, Basidiomycota): evidence for greater diversity and ecological flexibility than previously recognized

Nombuso P. Ngubane, Ryan Bracewell, Dominik Begerow, Pavel Drozd et al.
IMA Fungus
Yeasts and Rust Fungi Studies
article

The saprotrophic dimension of Exobasidium (Exobasidiales, Basidiomycota): evidence for greater diversity and ecological flexibility than previously recognized

Nombuso P. Ngubane, Ryan Bracewell, Dominik Begerow, Pavel Drozd, Martin Kostovčík, Tereza Veselská, Miroslav Kolařík, Martin Šigut, Petr Pyszko, Adéla Wennrich, Tereza Ježková, Denisa Hařovská
article en

Abstract

Fungi represent the largest group of plant pathogens, causing significant economic losses in agriculture and forestry worldwide. Species of the genus <i>Exobasidium</i> (<i>Exobasidiales</i>, <i>Basidiomycota</i>) are considered pathogens of plants from the order <i>Ericales</i>. While <i>Exobasidium</i> species notably impact tea and fruit production, their complete life cycles remain poorly understood, which hampers their management. These species are characterized by a dikaryotic parasitic stage tightly associated with living host tissues and a haploid, yeast-like saprotrophic stage. The prevalence, ecological significance, and potential contribution of this saprotrophic stage to the persistence of <i>Exobasidium</i> outside living host plants remain understudied. In this study, we confirmed the presence of several <i>Exobasidium</i> species in the leaf phyllosphere of five broad-leaved tree species in Central Europe using both cultivation and environmental DNA ITS2-based approaches. Additionally, we describe a new species without a known parasitic phase, <i>E. phylloplanum</i> <b>sp. nov</b>., along with its physiological description and annotated genome. Environmental DNA surveys, using the GlobalFungi database, revealed that <i>E. phylloplanum</i> is not only common locally but also the most frequently detected <i>Exobasidium</i> lineage worldwide. This broad ecological amplitude contrasts with the narrow host specificity typical of parasitic congeners, suggesting that <i>E. phylloplanum</i> has adapted to a generalist saprotrophic life-history strategy. Our findings demonstrate that <i>Exobasidium</i> species can persist saprotrophically on diverse hosts, suggesting a broader ecological role and higher diversity than previously recognized. This research elucidates the diverse ecological roles of <i>Exobasidium</i> species and suggests that further genomic studies could reveal the genetic factors that underpin the different life strategies within this genus.

IMA FungusVol. 17
Universität Hamburg (DE), University of Ostrava (CZ), Czech Academy of Sciences (CZ), Charles University (CZ), Indiana University Bloomington (US), Czech Academy of Sciences, Institute of Microbiology (CZ)
Grantová Agentura České Republiky, Akademie Věd České Republiky, Universität Hamburg, Horizon 2020 Framework Programme
Zero hunger
Openalex Percentile: Top 20%
Yeasts and Rust Fungi Studies
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