Oligomerization-competent PIF4 drives thermomorphogenesis through functional redundancy in transactivation and DNA binding

Plants tailor their architecture to warm temperatures through the central transcription factor PHYTOCHROME-INTERACTING FACTOR 4 (PIF4). Here, we dissect how structured and disordered regions of PIF4 contribute to its function in thermomorphogenesis. A long N-terminal intrinsically disordered region (IDR) enables PIF4 to form low-mobility condensates. Within this IDR, we identify an acidic transactivation domain (TAD) and an extended basic segment that carries a nuclear-localization signal and the canonical basic motif of the basic helix-loop-helix (bHLH) domain. The basic segment is both necessary and sufficient to drive PIF4 condensate formation, while the TAD tunes condensate properties. Strikingly, alanine substitutions that abolish TAD-mediated transactivation, disrupt DNA binding, or greatly reduce phase-separation propensity have no significant effect on thermomorphogenetic hypocotyl elongation. By contrast, substituting twelve basic residues within the basic segment, which disrupts both DNA binding and HLH-mediated oligomerization, abolishes thermo-induced hypocotyl growth. These findings suggest that PIF4's oligomerization competence contributes significantly to thermomorphogenesis by enabling partner recruitment, allowing DNA-binding and transactivation functions to be supplied in trans.

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Publication Details

Journal
Nature Communications
Published
2026-03-17
DOI
https://doi.org/10.1038/s41467-026-70748-x
Primary Topic
Microtubule and mitosis dynamics
Type
article
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article

Oligomerization-competent PIF4 drives thermomorphogenesis through functional redundancy in transactivation and DNA binding

Abhishesh Bajracharya, Eden E. Bayer, Scott R. Baerson, Jing Xi et al.
Nature Communications
Microtubule and mitosis dynamics
article

Oligomerization-competent PIF4 drives thermomorphogenesis through functional redundancy in transactivation and DNA binding

Abhishesh Bajracharya, Eden E. Bayer, Scott R. Baerson, Jing Xi, Ranjeeta Odari, Yongjian Qiu, Alyssa Stoner, Meng Chen, Anupa Wasti, Haibo Xiong
article en

Abstract

Plants tailor their architecture to warm temperatures through the central transcription factor PHYTOCHROME-INTERACTING FACTOR 4 (PIF4). Here, we dissect how structured and disordered regions of PIF4 contribute to its function in thermomorphogenesis. A long N-terminal intrinsically disordered region (IDR) enables PIF4 to form low-mobility condensates. Within this IDR, we identify an acidic transactivation domain (TAD) and an extended basic segment that carries a nuclear-localization signal and the canonical basic motif of the basic helix-loop-helix (bHLH) domain. The basic segment is both necessary and sufficient to drive PIF4 condensate formation, while the TAD tunes condensate properties. Strikingly, alanine substitutions that abolish TAD-mediated transactivation, disrupt DNA binding, or greatly reduce phase-separation propensity have no significant effect on thermomorphogenetic hypocotyl elongation. By contrast, substituting twelve basic residues within the basic segment, which disrupts both DNA binding and HLH-mediated oligomerization, abolishes thermo-induced hypocotyl growth. These findings suggest that PIF4's oligomerization competence contributes significantly to thermomorphogenesis by enabling partner recruitment, allowing DNA-binding and transactivation functions to be supplied in trans.

Nature Communications
University of California, Riverside (US), United States Department of Agriculture (US), National Center for Agricultural Utilization Research (US), University of Mississippi (US)
Openalex Percentile: Top 20%
Microtubule and mitosis dynamics
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