The chromosomal-level genome assembly and annotation of Phyllospadix iwatensis (Surfgrass)

Phyllospadix iwatensis is a unique seagrass species adapted to rocky substrate anchorage and dioecy and belongs to marine submerged flowering plants with a distinctive evolutionary history. The chromosomal-scale genome was constructed by integrating Illumina, PacBio HiFi, and high-throughput chromosome conformation capture (Hi-C) sequencing techniques. A total of 340.56 Mb of sequences were anchored to 10 chromosomes with an anchoring rate of 96.44%. The contig and scaffold N50 values reached 30.64 Mb and 33.59 Mb, respectively. Precisely 94.64% of the 23,198 predicted protein-coding genes received functional annotation. In the meantime, 180.19 Mb of repetitive sequences were found, representing 52.91% of the assembled genome. The chromosomal-level genome data of P. iwatensis will reveal its special process of differentiation and enrich the understanding of the multiple adaptations of seagrass populations to marine habitats.

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Publication Details

Journal
Scientific Data
Published
2026-03-12
DOI
https://doi.org/10.1038/s41597-026-06911-2
Primary Topic
Marine and coastal plant biology
Type
article
Field-Weighted Citation Impact
0.00

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article

The chromosomal-level genome assembly and annotation of Phyllospadix iwatensis (Surfgrass)

Quansheng Zhang, Junyi Wang, Dawei Wang, Zhining Liu et al.
Scientific Data
Marine and coastal plant biology
article

The chromosomal-level genome assembly and annotation of Phyllospadix iwatensis (Surfgrass)

Quansheng Zhang, Junyi Wang, Dawei Wang, Zhining Liu, Ke Zhao
article en

Abstract

Phyllospadix iwatensis is a unique seagrass species adapted to rocky substrate anchorage and dioecy and belongs to marine submerged flowering plants with a distinctive evolutionary history. The chromosomal-scale genome was constructed by integrating Illumina, PacBio HiFi, and high-throughput chromosome conformation capture (Hi-C) sequencing techniques. A total of 340.56 Mb of sequences were anchored to 10 chromosomes with an anchoring rate of 96.44%. The contig and scaffold N50 values reached 30.64 Mb and 33.59 Mb, respectively. Precisely 94.64% of the 23,198 predicted protein-coding genes received functional annotation. In the meantime, 180.19 Mb of repetitive sequences were found, representing 52.91% of the assembled genome. The chromosomal-level genome data of P. iwatensis will reveal its special process of differentiation and enrich the understanding of the multiple adaptations of seagrass populations to marine habitats.

Scientific Data
Yantai University (CN), Bureau of Geology and Mineral Exploration and Development of Guizhou Province (CN), Geological Exploration Institute of Shandong Zhengyuan (CN)
National Natural Science Foundation of China
Life below water
Openalex Percentile: Top 37%
Marine and coastal plant biology
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