ERGA-BGE reference genome of Diadema setosum: the Black Longspine Urchin invading the Mediterranean sea

<ns3:p> The <ns3:italic>Diadema setosum</ns3:italic> reference genome is important for understanding the species adaptation to the Mediterranean marine environment, where it has been newly introduced. The species is a Lessepsian migrant, gradually expanding to the eastern Mediterranean basin, driven by rising water temperature. <ns3:italic>Diadema setosum</ns3:italic> often dominates over native sea urchin species or coexists with them in rocky habitats. Sea urchins are environment-forming species, as they are intensive grazers responsible for habitat degradation and bottom erosion. A high-quality reference genome could provide valuable insights into the adaptive ability of <ns3:italic>D. setosum</ns3:italic> populations, supporting better monitoring and conservation efforts. Additionally, the genome will also contribute towards having a record of recently introduced populations to the Mediterranean, allowing researchers to track their evolution over time. A total of 22 contiguous chromosomal pseudomolecules were assembled from the genome sequence. This chromosome-level assembly encompasses 0.91 Gb, composed of 745 contigs and 101 scaffolds, with contig and scaffold N50 values of 2.2 Mb and 39.8 Mb, respectively. </ns3:p>

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Publication Details

Journal
Open Research Europe
Published
2026-03-12
DOI
https://doi.org/10.12688/openreseurope.20681.1
Primary Topic
Marine and coastal plant biology
Type
article
Field-Weighted Citation Impact
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article

ERGA-BGE reference genome of Diadema setosum: the Black Longspine Urchin invading the Mediterranean sea

Benjamin Istace, Katerina Vasileiadou, Genoscope Sequencing Team, Arnaud Couloux et al.
Open Research Europe
Marine and coastal plant biology
article

ERGA-BGE reference genome of Diadema setosum: the Black Longspine Urchin invading the Mediterranean sea

Benjamin Istace, Katerina Vasileiadou, Genoscope Sequencing Team, Arnaud Couloux, Rosa Fernández, Lola Demirdjian, Jean-Marc Aury, Alice Moussy, Corinne Cruaud, Patrick Wincker, Karine Labadie, Pedro H. Oliveira, Nuria Escudero, Astrid Böhne, Tereza Manousaki, Rita Monteiro
article en

Abstract

<ns3:p> The <ns3:italic>Diadema setosum</ns3:italic> reference genome is important for understanding the species adaptation to the Mediterranean marine environment, where it has been newly introduced. The species is a Lessepsian migrant, gradually expanding to the eastern Mediterranean basin, driven by rising water temperature. <ns3:italic>Diadema setosum</ns3:italic> often dominates over native sea urchin species or coexists with them in rocky habitats. Sea urchins are environment-forming species, as they are intensive grazers responsible for habitat degradation and bottom erosion. A high-quality reference genome could provide valuable insights into the adaptive ability of <ns3:italic>D. setosum</ns3:italic> populations, supporting better monitoring and conservation efforts. Additionally, the genome will also contribute towards having a record of recently introduced populations to the Mediterranean, allowing researchers to track their evolution over time. A total of 22 contiguous chromosomal pseudomolecules were assembled from the genome sequence. This chromosome-level assembly encompasses 0.91 Gb, composed of 745 contigs and 101 scaffolds, with contig and scaffold N50 values of 2.2 Mb and 39.8 Mb, respectively. </ns3:p>

Open Research EuropeVol. 6
Life below water
Openalex Percentile: Top 37%
Marine and coastal plant biology
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