ERGA-BGE reference genome of Diadema setosum: the Black Longspine Urchin invading the Mediterranean sea
<ns3:p> The <ns3:italic>Diadema setosum</ns3:italic> reference genome is important for understanding the species adaptation to the Mediterranean marine environment, where it has been newly introduced. The species is a Lessepsian migrant, gradually expanding to the eastern Mediterranean basin, driven by rising water temperature. <ns3:italic>Diadema setosum</ns3:italic> often dominates over native sea urchin species or coexists with them in rocky habitats. Sea urchins are environment-forming species, as they are intensive grazers responsible for habitat degradation and bottom erosion. A high-quality reference genome could provide valuable insights into the adaptive ability of <ns3:italic>D. setosum</ns3:italic> populations, supporting better monitoring and conservation efforts. Additionally, the genome will also contribute towards having a record of recently introduced populations to the Mediterranean, allowing researchers to track their evolution over time. A total of 22 contiguous chromosomal pseudomolecules were assembled from the genome sequence. This chromosome-level assembly encompasses 0.91 Gb, composed of 745 contigs and 101 scaffolds, with contig and scaffold N50 values of 2.2 Mb and 39.8 Mb, respectively. </ns3:p>
Authors
- Benjamin Istace (ORCID: https://orcid.org/0000-0003-1042-4803)
- Katerina Vasileiadou
- Genoscope Sequencing Team
- Arnaud Couloux
- Rosa Fernández
- Lola Demirdjian
- Jean-Marc Aury
- Alice Moussy
- Corinne Cruaud
- Patrick Wincker
- Karine Labadie
- Pedro H. Oliveira
- Nuria Escudero
- Astrid Böhne
- Tereza Manousaki
- Rita Monteiro
Publication Details
- Journal
- Open Research Europe
- Published
- 2026-03-12
- DOI
- https://doi.org/10.12688/openreseurope.20681.1
- Primary Topic
- Marine and coastal plant biology
- Type
- article
- Field-Weighted Citation Impact
- 0.00