Urbanization-Induced Shifts in Microbial Functional Genes of Wetland Nitrogen Cycling Promote Nitrous Oxide (N2O) Emissions

Urban wetlands are assumed to contribute to nitrous oxide (N<sub>2</sub>O) emissions; however, the microbial mechanisms underlying enhanced N<sub>2</sub>O fluxes in urban wetlands and differences in microbial responses between aquatic and soil compartments have not been clearly identified. Here, we characterized the nitrogen (N) cycling microbial communities and their functional metabolic pathways in urban and rural wetlands using metagenomics and N<sub>2</sub>O flux measurements. Results showed that urbanization drove a 6~8-fold increase in N<sub>2</sub>O fluxes from urban wetlands compared to rural wetlands. Structural equation modeling (SEM) confirmed that urbanization intensity was a primary driver (standardized coefficients: 0.72 for soil and 0.92 for water). In wetland water, N<sub>2</sub>O emissions were negatively correlated with inorganic nutrient concentrations (coefficient = -0.62). Aquatic microbial communities exhibited substantial taxonomic shifts but preserved network connectivity, indicating adaptive strategies for surviving urban perturbations at the cost of reduced functional redundancy. In wetland soil, microbial communities maintained stability under urbanization, which was attributed to environmental buffering from heterogeneous microenvironments. Soil N<sub>2</sub>O emissions were positively linked to microbial alpha diversity (coefficient = 0.79). Furthermore, urban wetlands enriched genes mediating nitrification and denitrification while depleting genes associated with N fixation and organic N metabolism. This functional shift reflects microbial specialization in processing elevated reactive N (Nr) inputs from urban sources, trapping urban wetlands in an "N loss loop" that reinforces high N<sub>2</sub>O fluxes. This study elucidates the microbial mechanisms governing wetland N<sub>2</sub>O emissions under urbanization, thereby enhancing understanding of microbially mediated N cycling in the urban wetland ecosystem.

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Journal
Microorganisms
Published
2026-03-12
DOI
https://doi.org/10.3390/microorganisms14030640
Primary Topic
Microbial Community Ecology and Physiology
Type
article
Field-Weighted Citation Impact
0.00

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article

Urbanization-Induced Shifts in Microbial Functional Genes of Wetland Nitrogen Cycling Promote Nitrous Oxide (N2O) Emissions

Xinyu Yi, Juyang Liao, Yinghe Peng, Junjie Lei et al.
Microorganisms
Microbial Community Ecology and Physiology
article

Urbanization-Induced Shifts in Microbial Functional Genes of Wetland Nitrogen Cycling Promote Nitrous Oxide (N2O) Emissions

Xinyu Yi, Juyang Liao, Yinghe Peng, Junjie Lei, Li Wang, Ye Liu, Linshi Wu, Yuwen Lin, Chan Chen, Chen Ning
article en

Abstract

Urban wetlands are assumed to contribute to nitrous oxide (N<sub>2</sub>O) emissions; however, the microbial mechanisms underlying enhanced N<sub>2</sub>O fluxes in urban wetlands and differences in microbial responses between aquatic and soil compartments have not been clearly identified. Here, we characterized the nitrogen (N) cycling microbial communities and their functional metabolic pathways in urban and rural wetlands using metagenomics and N<sub>2</sub>O flux measurements. Results showed that urbanization drove a 6~8-fold increase in N<sub>2</sub>O fluxes from urban wetlands compared to rural wetlands. Structural equation modeling (SEM) confirmed that urbanization intensity was a primary driver (standardized coefficients: 0.72 for soil and 0.92 for water). In wetland water, N<sub>2</sub>O emissions were negatively correlated with inorganic nutrient concentrations (coefficient = -0.62). Aquatic microbial communities exhibited substantial taxonomic shifts but preserved network connectivity, indicating adaptive strategies for surviving urban perturbations at the cost of reduced functional redundancy. In wetland soil, microbial communities maintained stability under urbanization, which was attributed to environmental buffering from heterogeneous microenvironments. Soil N<sub>2</sub>O emissions were positively linked to microbial alpha diversity (coefficient = 0.79). Furthermore, urban wetlands enriched genes mediating nitrification and denitrification while depleting genes associated with N fixation and organic N metabolism. This functional shift reflects microbial specialization in processing elevated reactive N (Nr) inputs from urban sources, trapping urban wetlands in an "N loss loop" that reinforces high N<sub>2</sub>O fluxes. This study elucidates the microbial mechanisms governing wetland N<sub>2</sub>O emissions under urbanization, thereby enhancing understanding of microbially mediated N cycling in the urban wetland ecosystem.

MicroorganismsVol. 14(3)
Central South University of Forestry and Technology (CN), Nanjing Agricultural University (CN), Central South University (CN), Hunan Entry-Exit Inspection and Quarantine Bureau (CN)
National Natural Science Foundation of China
Sustainable cities and communities
Openalex Percentile: Top 33%
Microbial Community Ecology and Physiology
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