Discovery and engineering of bacterial P450s for C-14 hydroxylation in ent-kaurane diterpenoids

ent-Kaurane diterpenoids (ent-KTs) represent a structurally diverse class of natural products renowned for their antitumor and anti-inflammatory bioactivities. The C-14 hydroxyl modification is crucial for enhancing their potency; however, introducing this functional group remains a considerable challenge. Here, we present a computational heme-guided site-specific (CHS) strategy to identify three bacterial P450s (CYP260A1, CYP105N1, and CYP154C5) for C-14 hydroxylation. Further computationally guided enzyme engineering and redox partner screening identify the CYP260A1 L162V variant paired with CamA/CamB, achieving a 52-fold increase in production titer and a yield of 84.2 mg/L of (14R,16R)-ent-kauran-14,16-diol (2) in Escherichia coli. Substrate scope test reveals functional groups affecting reactivity. Structure-activity relationship studies demonstrate the synergistic effect between the C-14 hydroxyl and C15-C16 Michael acceptor, resulting in a potent derivative (27) with strong cytotoxicity (IC<sub>50</sub><sup>HCT116</sup> = 1.4 μM). This study demonstrates a framework combining CHS-guided P450 discovery and computational enzyme engineering to advance ent-KT modifications.

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Journal
Nature Communications
Published
2026-03-12
DOI
https://doi.org/10.1038/s41467-026-70157-0
Primary Topic
Bioactive Natural Diterpenoids Research
Type
article
Field-Weighted Citation Impact
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article

Discovery and engineering of bacterial P450s for C-14 hydroxylation in ent-kaurane diterpenoids

Xiaoxu Lin, Xingming Pan, Ninghua Tan, Zhixi Xiao et al.
Nature Communications
Bioactive Natural Diterpenoids Research
article

Discovery and engineering of bacterial P450s for C-14 hydroxylation in ent-kaurane diterpenoids

Xiaoxu Lin, Xingming Pan, Ninghua Tan, Zhixi Xiao, Liao-Bin Dong, Zhe Wang, Hui-Min Xu, Fang-Ru Li, Li Feng, Chenxi Zhu, Xiaowei Zhang, Xingwang Xu, Chenxi He
article en

Abstract

ent-Kaurane diterpenoids (ent-KTs) represent a structurally diverse class of natural products renowned for their antitumor and anti-inflammatory bioactivities. The C-14 hydroxyl modification is crucial for enhancing their potency; however, introducing this functional group remains a considerable challenge. Here, we present a computational heme-guided site-specific (CHS) strategy to identify three bacterial P450s (CYP260A1, CYP105N1, and CYP154C5) for C-14 hydroxylation. Further computationally guided enzyme engineering and redox partner screening identify the CYP260A1 L162V variant paired with CamA/CamB, achieving a 52-fold increase in production titer and a yield of 84.2 mg/L of (14R,16R)-ent-kauran-14,16-diol (2) in Escherichia coli. Substrate scope test reveals functional groups affecting reactivity. Structure-activity relationship studies demonstrate the synergistic effect between the C-14 hydroxyl and C15-C16 Michael acceptor, resulting in a potent derivative (27) with strong cytotoxicity (IC<sub>50</sub><sup>HCT116</sup> = 1.4 μM). This study demonstrates a framework combining CHS-guided P450 discovery and computational enzyme engineering to advance ent-KT modifications.

Nature Communications
China Pharmaceutical University (CN)
National Science Foundation, Shandong University, National Natural Science Foundation of China, China Pharmaceutical University, Government of Jiangsu Province, Natural Science Foundation of Jiangsu Province, Southwest University, State Key Laboratory of Natural Medicines, Fundamental Research Funds for the Central Universities, Natural Science Foundation of Jiangsu Province for Distinguished Young Scholars
Openalex Percentile: Top 25%
Bioactive Natural Diterpenoids Research
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