Introduction to Single‐Cell Physiologically‐Based Pharmacokinetic ( scPBPK ) Models

The current investigation introduces single-cell physiologically-based pharmacokinetic (scPBPK) models to gain insight into drug disposition at the cellular scale. The transition from standard PBPK (sPBPK) models to scPBPK models required depiction of expression-dependent (ED) processes, such as drug metabolism or membrane transport. ED processes utilize weighting functions - a defined or data-driven distribution -that yield heterogeneity in individual cell kinetics. Two scPBPK model examples are provided, one involving a drug (AZD1775) subject to 3 ED blood-brain barrier transport processes, and another drug (midazolam) with a single ED process of metabolism by hepatocytes. For both examples, the weighting function for each ED process was defined by a negative binomial distribution that is often used in scRNAseq analytics. The AZD1775 model simulations indicated a large degree of single cell drug concentration heterogeneity, whereas those for midazolam did not, due to high membrane transport relative to metabolism. scPBPK models offer a means to probe cellular pharmacokinetics compatible with modern omic technologies and may be extended to pharmacodynamic models.

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Publication Details

Journal
CPT Pharmacometrics & Systems Pharmacology
Published
2026-08-20
DOI
https://doi.org/10.1002/psp4.70320
Primary Topic
Single-cell and spatial transcriptomics
Type
article
Field-Weighted Citation Impact
0.00

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article

Introduction to Single‐Cell Physiologically‐Based Pharmacokinetic ( scPBPK ) Models

James M. Gallo, Anshul Saini
CPT Pharmacometrics & Systems Pharmacology
Single-cell and spatial transcriptomics
article

Introduction to Single‐Cell Physiologically‐Based Pharmacokinetic ( scPBPK ) Models

James M. Gallo, Anshul Saini
article en

Abstract

The current investigation introduces single-cell physiologically-based pharmacokinetic (scPBPK) models to gain insight into drug disposition at the cellular scale. The transition from standard PBPK (sPBPK) models to scPBPK models required depiction of expression-dependent (ED) processes, such as drug metabolism or membrane transport. ED processes utilize weighting functions - a defined or data-driven distribution -that yield heterogeneity in individual cell kinetics. Two scPBPK model examples are provided, one involving a drug (AZD1775) subject to 3 ED blood-brain barrier transport processes, and another drug (midazolam) with a single ED process of metabolism by hepatocytes. For both examples, the weighting function for each ED process was defined by a negative binomial distribution that is often used in scRNAseq analytics. The AZD1775 model simulations indicated a large degree of single cell drug concentration heterogeneity, whereas those for midazolam did not, due to high membrane transport relative to metabolism. scPBPK models offer a means to probe cellular pharmacokinetics compatible with modern omic technologies and may be extended to pharmacodynamic models.

CPT Pharmacometrics & Systems PharmacologyVol. 15(9)
University at Buffalo, State University of New York (US), Columbia University (US)
National Institutes of Health
Good health and well-being
Openalex Percentile: Top 81%
Single-cell and spatial transcriptomics
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