C2M-Mamba: drug-drug interaction prediction based on cross-modal cross-Mamba
Accurately predicting potential drug-drug interactions (DDIs) from multimodal data is critical for medication safety and adverse drug reaction prevention. Existing methods face challenges in modeling long-range dependencies and effectively integrating heterogeneous features from structured molecular data and unstructured text. To address these limitations, we propose C2M-Mamba, a cross-modal framework that integrates convolutional neural networks, Mamba, and cross-Mamba (CroMamba) to capture discriminative features from drug descriptions, SMILES sequences, and social media texts. The model efficiently handles long-range dependencies through state space models while enabling effective cross-modal fusion. Comprehensive evaluations on the DDIExtraction2013 dataset demonstrate that C2M-Mamba outperforms 10 state-of-the-art baselines, achieving 82.37% precision, 80.98% F1-score, and 88.73% AUC. The proposed approach also exhibits robust performance in handling class imbalance and provides interpretable predictions, offering a reliable solution for multimodal DDI prediction with potential applications in pharmacovigilance and personalized medicine.
Authors
- Shimin Zhang (ORCID: https://orcid.org/0009-0004-4344-5218)
- Dengwu Wang
- Chuanlei Zhang
Institutions
- Tianjin University of Science and Technology (CN)
- Tianjin University of Technology (CN)
- Xijing University (CN)
Publication Details
- Journal
- BMC Bioinformatics
- Published
- 2026-03-11
- DOI
- https://doi.org/10.1186/s12859-026-06420-4
- Primary Topic
- Computational Drug Discovery Methods
- Type
- article
- Field-Weighted Citation Impact
- 0.00