Antibacterial Activity and Molecular Docking of a Bicyclic Lactone as aBiotransformed Product from β-caryophyllene using <i>Aspergillus niger</i>

introduction: β-caryophyllene and its derivatives play an important role as antibacterial agents. This study is a continuation of the biotransformation of β-caryophyllene using Aspergillus niger, where metabolite 1 was isolated and identified in our previous study. Here, we investigate its antibacterial activity against both Gram-positive and Gram-negative bacteria, in addition to molecular docking studies. methods: The antibacterial activity of the transformed product was evaluated by using the standard agar cup bioassay method. A deep computational study has been performed to elucidate the antibacterial mechanism of Compound 1, including Glide XP docking and Prime/MMGBSA free-energy calculations against PBP1b, DNA gyrase AⁿBⁿ, and ClpP. results: Metabolite 1 showed significant growth inhibitions of Gram-positive bacteria, Bacillus subtilis and Staphylococcus aureus (9.0 ± 0.2 mm and 10.0 ± 0.2 mm). Also, against Gramnegative bacteria, Pseudomonas aeruginosa, Escherichia coli, and Salmonella typhi (7.0 ± 0.2 mm, 8.0 ± 0.2 mm, and 9.0 ± 0.2 mm). ADMET analysis indicated that Compound 1 has excellent oral absorption (83.3%) and fully complies with Lipinski’s rules, outperforming imipenem. discussion: The present study aimed to evaluate antibacterial activities of metabolite 1 (100 ug/mL) against Gram-positive organisms (B. subtilis and S. aureus) and Gram-negative organisms (P. aeruginosa, E. coli, and S. typhi), in comparison with imipenem, followed by computational studies. conclusion: Metabolite 1 showed significant antibacterial activities against Gram-positive and Gram-negative organisms. Our findings demonstrate that Compound 1 binds strongly to ClpP (Glide Gscore –6.27; ΔG_bind –34.51 kcal/mol), engaging key hydrogen-bond and hydrophobic interactions, thus reinforcing its promise as a multi-target antibacterial candidate

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Journal
The Natural Products Journal
Published
2026-03-04
DOI
https://doi.org/10.2174/0122103155417243251112001328
Primary Topic
Sesquiterpenes and Asteraceae Studies
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article
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article

Antibacterial Activity and Molecular Docking of a Bicyclic Lactone as aBiotransformed Product from β-caryophyllene using Aspergillus niger

Haroon M. Haniffa, Mohammad Yasin Mohammad, Ala’ Omar Hasan Zayed, Mousa AlTarabeen et al.
The Natural Products Journal
Sesquiterpenes and Asteraceae Studies
article

Antibacterial Activity and Molecular Docking of a Bicyclic Lactone as aBiotransformed Product from β-caryophyllene using Aspergillus niger

Haroon M. Haniffa, Mohammad Yasin Mohammad, Ala’ Omar Hasan Zayed, Mousa AlTarabeen, Nidal Odat, M. Iqbal Choudhary, Ehab Al-khreshah
article en

Abstract

introduction: β-caryophyllene and its derivatives play an important role as antibacterial agents. This study is a continuation of the biotransformation of β-caryophyllene using Aspergillus niger, where metabolite 1 was isolated and identified in our previous study. Here, we investigate its antibacterial activity against both Gram-positive and Gram-negative bacteria, in addition to molecular docking studies. methods: The antibacterial activity of the transformed product was evaluated by using the standard agar cup bioassay method. A deep computational study has been performed to elucidate the antibacterial mechanism of Compound 1, including Glide XP docking and Prime/MMGBSA free-energy calculations against PBP1b, DNA gyrase AⁿBⁿ, and ClpP. results: Metabolite 1 showed significant growth inhibitions of Gram-positive bacteria, Bacillus subtilis and Staphylococcus aureus (9.0 ± 0.2 mm and 10.0 ± 0.2 mm). Also, against Gramnegative bacteria, Pseudomonas aeruginosa, Escherichia coli, and Salmonella typhi (7.0 ± 0.2 mm, 8.0 ± 0.2 mm, and 9.0 ± 0.2 mm). ADMET analysis indicated that Compound 1 has excellent oral absorption (83.3%) and fully complies with Lipinski’s rules, outperforming imipenem. discussion: The present study aimed to evaluate antibacterial activities of metabolite 1 (100 ug/mL) against Gram-positive organisms (B. subtilis and S. aureus) and Gram-negative organisms (P. aeruginosa, E. coli, and S. typhi), in comparison with imipenem, followed by computational studies. conclusion: Metabolite 1 showed significant antibacterial activities against Gram-positive and Gram-negative organisms. Our findings demonstrate that Compound 1 binds strongly to ClpP (Glide Gscore –6.27; ΔG_bind –34.51 kcal/mol), engaging key hydrogen-bond and hydrophobic interactions, thus reinforcing its promise as a multi-target antibacterial candidate

The Natural Products JournalVol. 16
Al-Ahliyya Amman University (JO), American University of Madaba (JO), South Eastern University of Sri Lanka (LK), University of Karachi (PK), University of Malaya (MY), Al-Balqa Applied University (JO), International Center for Chemical and Biological Sciences (PK)
Affordable and clean energy
Openalex Percentile: Top 25%
Sesquiterpenes and Asteraceae Studies
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