Antibacterial Activity and Molecular Docking of a Bicyclic Lactone as aBiotransformed Product from β-caryophyllene using <i>Aspergillus niger</i>
introduction: β-caryophyllene and its derivatives play an important role as antibacterial agents. This study is a continuation of the biotransformation of β-caryophyllene using Aspergillus niger, where metabolite 1 was isolated and identified in our previous study. Here, we investigate its antibacterial activity against both Gram-positive and Gram-negative bacteria, in addition to molecular docking studies. methods: The antibacterial activity of the transformed product was evaluated by using the standard agar cup bioassay method. A deep computational study has been performed to elucidate the antibacterial mechanism of Compound 1, including Glide XP docking and Prime/MMGBSA free-energy calculations against PBP1b, DNA gyrase AⁿBⁿ, and ClpP. results: Metabolite 1 showed significant growth inhibitions of Gram-positive bacteria, Bacillus subtilis and Staphylococcus aureus (9.0 ± 0.2 mm and 10.0 ± 0.2 mm). Also, against Gramnegative bacteria, Pseudomonas aeruginosa, Escherichia coli, and Salmonella typhi (7.0 ± 0.2 mm, 8.0 ± 0.2 mm, and 9.0 ± 0.2 mm). ADMET analysis indicated that Compound 1 has excellent oral absorption (83.3%) and fully complies with Lipinski’s rules, outperforming imipenem. discussion: The present study aimed to evaluate antibacterial activities of metabolite 1 (100 ug/mL) against Gram-positive organisms (B. subtilis and S. aureus) and Gram-negative organisms (P. aeruginosa, E. coli, and S. typhi), in comparison with imipenem, followed by computational studies. conclusion: Metabolite 1 showed significant antibacterial activities against Gram-positive and Gram-negative organisms. Our findings demonstrate that Compound 1 binds strongly to ClpP (Glide Gscore –6.27; ΔG_bind –34.51 kcal/mol), engaging key hydrogen-bond and hydrophobic interactions, thus reinforcing its promise as a multi-target antibacterial candidate
Authors
- Haroon M. Haniffa (ORCID: https://orcid.org/0000-0001-7439-0724)
- Mohammad Yasin Mohammad (ORCID: https://orcid.org/0000-0002-0641-1586)
- Ala’ Omar Hasan Zayed (ORCID: https://orcid.org/0000-0003-0502-4805)
- Mousa AlTarabeen (ORCID: https://orcid.org/0000-0002-4780-4837)
- Nidal Odat
- M. Iqbal Choudhary
- Ehab Al-khreshah
Institutions
- Al-Ahliyya Amman University (JO)
- American University of Madaba (JO)
- South Eastern University of Sri Lanka (LK)
- University of Karachi (PK)
- University of Malaya (MY)
- Al-Balqa Applied University (JO)
- International Center for Chemical and Biological Sciences (PK)
Publication Details
- Journal
- The Natural Products Journal
- Published
- 2026-03-04
- DOI
- https://doi.org/10.2174/0122103155417243251112001328
- Primary Topic
- Sesquiterpenes and Asteraceae Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.00