A class of unrooted phylogenetic networks inspired by the properties of rooted tree-child networks
A directed phylogenetic network is tree-child if every non-leaf vertex has a child that is not a reticulation. As a class of directed phylogenetic networks, tree-child networks are very useful from a computational perspective. For example, several computationally difficult problems in phylogenetics become tractable when restricted to tree-child networks. At the same time, the class itself is rich enough to contain quite complex networks. Furthermore, checking whether a directed network is tree-child can be done in polynomial time. In this paper, we seek a class of undirected phylogenetic networks that is rich and computationally useful in a similar way to the class tree-child directed networks. A natural class to consider for this role is the class of tree-child-orientable networks which contains all those undirected phylogenetic networks whose edges can be oriented to create a tree-child network. However, we show here that recognizing such networks is NP-hard, even for binary networks, and as such this class is inappropriate for this role. Towards finding a class of undirected networks that fills a similar role to directed tree-child networks, we propose new classes called $q$-cuttable networks, for any integer $q\geq 1$. We show that these classes have many of the desirable properties, similar to tree-child networks in the rooted case, including being recognizable in polynomial time, for all $q\geq 1$. Towards showing the computational usefulness of the class, we show that the NP-hard problem Tree Containment is polynomial-time solvable when restricted to $q$-cuttable networks with $q\geq 3$.
Authors
- Norbert Zeh (ORCID: https://orcid.org/0000-0002-0562-1629)
- Simone Linz (ORCID: https://orcid.org/0000-0003-0862-9594)
- Leo J. J. van Iersel (ORCID: https://orcid.org/0000-0001-7142-4706)
- Mark Jones
Publication Details
- Journal
- Discrete Applied Mathematics
- Published
- 2026-10-16
- DOI
- https://doi.org/10.1016/j.dam.2026.10.022
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- National Science Foundation
- Royal Society Te Apārangi
- Nederlandse Organisatie voor Wetenschappelijk Onderzoek
- Natural Sciences and Engineering Research Council of Canada
- Marsden Fund