Development and application of an ANN-perception-based autonomous control system for Escherichia coli cultivation process

To address the challenges of overflow metabolism and the heavy reliance on manual intervention in high-density <i>Escherichia coli</i> fermentation, this study introduces an AI-driven, autonomous intelligent control system. Using superfolder green fluorescent protein (sfGFP) as a reporter, the research first optimized DO-stat feeding parameters and the induction process, achieving a 52.85% increase in cellular specific fluorescence intensity and significantly enhancing protein expression levels. Subsequently, an artificial neural network (ANN) model was developed and trained to achieve real-time recognition of dissolved oxygen (DO) baselines (<i>R</i> <sup>2</sup> = 0.998). This model was integrated with feeding control logic to form the NeuroStat-Ctrl system, enabling fully autonomous control across the entire fermentation lifecycle. Utilizing this system, unattended <i>E. coli</i> fermentation was successfully achieved, with fluorescent protein production further increasing by 5.87% compared to the optimized manual control. Experimental validation demonstrated that the system effectively mitigates feeding deviations inherent in traditional fixed-threshold strategies, prevents metabolic overflow, and enhances process stability and reproducibility. Furthermore, this system provides an efficient, standardized, and intelligent solution for high-throughput strain screening and process validation in parallel bioreactors.

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Publication Details

Journal
Frontiers in Microbiology
Published
2026-03-09
DOI
https://doi.org/10.3389/fmicb.2026.1791815
Primary Topic
Viral Infectious Diseases and Gene Expression in Insects
Type
article
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article

Development and application of an ANN-perception-based autonomous control system for Escherichia coli cultivation process

N. V. Mushnikov, X Li, Beichen Zhao, Zhenggang Xie et al.
Frontiers in Microbiology
Viral Infectious Diseases and Gene Expression in Insects
article

Development and application of an ANN-perception-based autonomous control system for Escherichia coli cultivation process

N. V. Mushnikov, X Li, Beichen Zhao, Zhenggang Xie, Zhiren Gan, Mengxuan Zhou, Renquan Guo, Jingyan Jiang, Jian Ding
article en

Abstract

To address the challenges of overflow metabolism and the heavy reliance on manual intervention in high-density <i>Escherichia coli</i> fermentation, this study introduces an AI-driven, autonomous intelligent control system. Using superfolder green fluorescent protein (sfGFP) as a reporter, the research first optimized DO-stat feeding parameters and the induction process, achieving a 52.85% increase in cellular specific fluorescence intensity and significantly enhancing protein expression levels. Subsequently, an artificial neural network (ANN) model was developed and trained to achieve real-time recognition of dissolved oxygen (DO) baselines (<i>R</i> <sup>2</sup> = 0.998). This model was integrated with feeding control logic to form the NeuroStat-Ctrl system, enabling fully autonomous control across the entire fermentation lifecycle. Utilizing this system, unattended <i>E. coli</i> fermentation was successfully achieved, with fluorescent protein production further increasing by 5.87% compared to the optimized manual control. Experimental validation demonstrated that the system effectively mitigates feeding deviations inherent in traditional fixed-threshold strategies, prevents metabolic overflow, and enhances process stability and reproducibility. Furthermore, this system provides an efficient, standardized, and intelligent solution for high-throughput strain screening and process validation in parallel bioreactors.

Frontiers in MicrobiologyVol. 17
Jiangnan University (CN), University of Auckland (NZ), Japan Bio Products (Japan) (JP), Malaysia University of Science and Technology (MY)
Responsible consumption and production
Openalex Percentile: Top 28%
Viral Infectious Diseases and Gene Expression in Insects
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Development and application of an ANN-perception-based autonomous control system for Escherichia coli cultivation process — N. V. Mushnikov, X Li, et al. · Frontiers in Microbiology (2026) | TGRS Research Map | TGRS