ERGA-BGE Chromosome-Level Genome of Patella rustica Linnaeus, 1758: a Resource to Investigate Responses to Global Warming in the intertidal

The reference genome of <i>Patella rustica</i> Linnaeus, 1758 (Gastropoda, Patellidae) will offer a unique opportunity to understand how intertidal organisms respond to the effects of global warming, contributing to improve our predictions about the impact of climate change on the maintenance and diversification of marine biodiversity. A total of 9 contiguous chromosomal pseudomolecules were assembled from the genome sequence, made up from Oxford Nanopore Technologies (ONT) long-reads, WGS and Chromatin-Conformation-Capture (Hi-C) short-read sequences. This chromosome-level assembly encompasses 719 Mb, composed of 157 contigs and 24 scaffolds, with contig and scaffold N50 values of 8.52 Mb and 83.6 Mb, respectively, and assembly and annotation BUSCO completeness of 97.7% and 96.5%, respectively. The production of this genome assembly and annotation was coordinated and supported by the European Reference Genome Atlas (ERGA) and Biodiversity Genomics Europe project (BGE).

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Publication Details

Journal
Open Research Europe
Published
2026-03-09
DOI
https://doi.org/10.12688/openreseurope.21608.2
Primary Topic
Genomics and Phylogenetic Studies
Type
article
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article

ERGA-BGE Chromosome-Level Genome of Patella rustica Linnaeus, 1758: a Resource to Investigate Responses to Global Warming in the intertidal

Francisco Câmara Ferreira, Thomas Marcussen, Rebekah A. Oomen, Rocío Nieto Vilela et al.
Open Research Europe
Genomics and Phylogenetic Studies
article

ERGA-BGE Chromosome-Level Genome of Patella rustica Linnaeus, 1758: a Resource to Investigate Responses to Global Warming in the intertidal

Francisco Câmara Ferreira, Thomas Marcussen, Rebekah A. Oomen, Rocío Nieto Vilela, Jèssica Gómez-Garrido, Leanne Haggerty, Marta Gut, Fernando P Lima, Tom C. Brown, Torsten H Struck, Anna Lazar, Fernando Cruz, Fergal Martin, Tyler Alioto, Laura Aguilera, Rui Faria, Astrid Böhne, Rita Monteiro
article en

Abstract

The reference genome of <i>Patella rustica</i> Linnaeus, 1758 (Gastropoda, Patellidae) will offer a unique opportunity to understand how intertidal organisms respond to the effects of global warming, contributing to improve our predictions about the impact of climate change on the maintenance and diversification of marine biodiversity. A total of 9 contiguous chromosomal pseudomolecules were assembled from the genome sequence, made up from Oxford Nanopore Technologies (ONT) long-reads, WGS and Chromatin-Conformation-Capture (Hi-C) short-read sequences. This chromosome-level assembly encompasses 719 Mb, composed of 157 contigs and 24 scaffolds, with contig and scaffold N50 values of 8.52 Mb and 83.6 Mb, respectively, and assembly and annotation BUSCO completeness of 97.7% and 96.5%, respectively. The production of this genome assembly and annotation was coordinated and supported by the European Reference Genome Atlas (ERGA) and Biodiversity Genomics Europe project (BGE).

Open Research EuropeVol. 5
University of New Brunswick (CA), European Bioinformatics Institute (GB), Universidade do Porto (PT), University of Oslo (NO), University of Agder (NO), Zoological Research Museum Alexander Koenig (DE), Berlin Center for Genomics in Biodiversity Research (DE), Centro Nacional de Análisis Genómico (ES), Leibniz Institute for Zoo and Wildlife Research (DE), Universitat de Barcelona (ES), University of Gothenburg (SE)
Life below water
Openalex Percentile: Top 29%
Genomics and Phylogenetic Studies
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