Description of Sphingobium wonjuense sp. nov. isolated from mountain soil and Sphingobium erigeronicola sp. nov. isolated from plant root

Two novel bacterial strains designated CR2-8<sup>T</sup> and HWE2-09<sup>T</sup> were isolated from mountain soil and plant root, respectively, and characterized using a polyphasic taxonomic approach. Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain CR2-8<sup>T</sup> shared the highest sequence similarity with <i>Sphingobium limneticum</i> 301<sup>T</sup> (98.0%), and HWE2-09<sup>T</sup> with <i>Sphingobium rhizovicinum</i> CC-FH12-1<sup>T</sup> (97.8%). The genome-based comparison indicated that both CR2-8<sup>T</sup> and HWE2-09<sup>T</sup> shared the highest relatedness with <i>Sphingobium cupriresistens</i> CU4<sup>T</sup>, sharing 84.05% and 84.7 % orthologous average nucleotide identity and 29.3% and 30.3 % digital DNA-DNA hybridization, respectively, all of which were clearly below the suggested cutoffs for species distinction. For both strains, the major fatty acids were two summed features, one consisting of C<sub>16 : 1</sub> ω7c and/or C<sub>16 : 1</sub> ω6c and the other consisting of C<sub>18 : 1</sub> ω7c and/or C<sub>18 : 1</sub> ω6c, and also C<sub>14 : 0</sub> 2OH and C<sub>16 : 0</sub>. The major ubiquinone was Q-10, and the main polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and phosphatidyldimethylethanolamine for both strains. The DNA G+C content of strain CR2-8<sup>T</sup> was 63.16 %, and that of strain HWE2-09<sup>T</sup> was 63.26 %. The phenotypic, chemotaxonomic and phylogenetic analyses indicate that each of the strains CR2-8<sup>T</sup> and HWE2-09<sup>T</sup> should be classified as a new species of <i>Sphingobium</i>, for which the names <i>Sphingobium wonjuense</i> sp. nov. (type strain=CR2-8<sup>T</sup>=KCTC 8939<sup>T</sup>=JCM 36935<sup>T</sup>) and <i>Sphingobium erigeronicola</i> sp. nov. (type strain=HWE2-09<sup>T</sup>=KCTC 8940<sup>T</sup>=JCM 36936<sup>T</sup>) are proposed.

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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2026-03-09
DOI
https://doi.org/10.1099/ijsem.0.007100
Primary Topic
Genomics and Phylogenetic Studies
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article

Description of Sphingobium wonjuense sp. nov. isolated from mountain soil and Sphingobium erigeronicola sp. nov. isolated from plant root

Seung Bum Kim, Chae Rin Jeong
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Genomics and Phylogenetic Studies
article

Description of Sphingobium wonjuense sp. nov. isolated from mountain soil and Sphingobium erigeronicola sp. nov. isolated from plant root

Seung Bum Kim, Chae Rin Jeong
article en

Abstract

Two novel bacterial strains designated CR2-8<sup>T</sup> and HWE2-09<sup>T</sup> were isolated from mountain soil and plant root, respectively, and characterized using a polyphasic taxonomic approach. Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain CR2-8<sup>T</sup> shared the highest sequence similarity with <i>Sphingobium limneticum</i> 301<sup>T</sup> (98.0%), and HWE2-09<sup>T</sup> with <i>Sphingobium rhizovicinum</i> CC-FH12-1<sup>T</sup> (97.8%). The genome-based comparison indicated that both CR2-8<sup>T</sup> and HWE2-09<sup>T</sup> shared the highest relatedness with <i>Sphingobium cupriresistens</i> CU4<sup>T</sup>, sharing 84.05% and 84.7 % orthologous average nucleotide identity and 29.3% and 30.3 % digital DNA-DNA hybridization, respectively, all of which were clearly below the suggested cutoffs for species distinction. For both strains, the major fatty acids were two summed features, one consisting of C<sub>16 : 1</sub> ω7c and/or C<sub>16 : 1</sub> ω6c and the other consisting of C<sub>18 : 1</sub> ω7c and/or C<sub>18 : 1</sub> ω6c, and also C<sub>14 : 0</sub> 2OH and C<sub>16 : 0</sub>. The major ubiquinone was Q-10, and the main polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and phosphatidyldimethylethanolamine for both strains. The DNA G+C content of strain CR2-8<sup>T</sup> was 63.16 %, and that of strain HWE2-09<sup>T</sup> was 63.26 %. The phenotypic, chemotaxonomic and phylogenetic analyses indicate that each of the strains CR2-8<sup>T</sup> and HWE2-09<sup>T</sup> should be classified as a new species of <i>Sphingobium</i>, for which the names <i>Sphingobium wonjuense</i> sp. nov. (type strain=CR2-8<sup>T</sup>=KCTC 8939<sup>T</sup>=JCM 36935<sup>T</sup>) and <i>Sphingobium erigeronicola</i> sp. nov. (type strain=HWE2-09<sup>T</sup>=KCTC 8940<sup>T</sup>=JCM 36936<sup>T</sup>) are proposed.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 76(3)
Chungnam National University (KR)
Life in Land
Openalex Percentile: Top 29%
Genomics and Phylogenetic Studies
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Description of Sphingobium wonjuense sp. nov. isolated from mountain soil and Sphingobium erigeronicola sp. nov. isolated from plant root — Seung Bum Kim, Chae Rin Jeong · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2026) | TGRS Research Map | TGRS