Novel transposon Tn <i>8026</i> acts as a global driver of transmissible linezolid resistance in <i>Enterococcus</i> via a linear plasmid
Linezolid is a critical last-resort antimicrobial for multidrug-resistant <i>Enterococcus faecium</i> , particularly against vancomycin-resistant lineages where therapeutic options are severely limited. While resistance has historically arisen through <i>de novo</i> chromosomal mutations, the global emergence of transferable resistance mechanisms threatens to render more infections untreatable. Here, we characterise a recent (2023-2024) hospital-associated outbreak of linezolid-resistant <i>E. faecium</i> in Queensland, Australia. Although the cohort comprised a variety of sequence types, the outbreak was primarily driven by the clonal expansion of an ST80 lineage carrying the plasmid-borne <i>poxtA-Ef</i> gene. Standard short-read genomic surveillance failed to resolve the genetic context of the resistance determinant. However, long-read sequencing revealed that <i>poxtA-Ef</i> was carried within a novel transposon, Tn <i>8026</i> , situated on a linear plasmid. Structural analysis defined Tn <i>8026</i> as a unique element flanked by IS <i>1678</i> and the novel insertion sequence IS <i>Efa26</i> . Furthermore, we identified an instance of Tn <i>8026</i> integration into the chromosome, providing functional evidence of its mobility and capacity for stabilisation within the genome. Global genomic screening demonstrated that Tn <i>8026</i> significantly predates the local outbreak, identified in a historical Norwegian isolate from 2012, indicating a long-standing yet unrecognised global reservoir. Phylogenomic analysis provided strong evidence that the linear plasmid was imported from the Indian subcontinent, initiating a chain of silent dissemination in eastern Australia where the lineage circulated undetected prior to clinical recognition. Crucially, we also confirmed the presence of the linear plasmid in <i>Enterococcus gallinarum</i> , demonstrating its capacity to mobilise transmissible linezolid resistance across enterococcal species boundaries. These findings emphasise the need for detailed long-read-based surveillance of mobile genetic elements, with a particular focus on identifying linear plasmids that are often overlooked.
Authors
- Naomi Runnegar (ORCID: https://orcid.org/0000-0003-1196-4131)
- Bianca Graves (ORCID: https://orcid.org/0000-0002-0634-677X)
- Jocelyn Hume (ORCID: https://orcid.org/0000-0002-1092-4958)
- Michael B. Hall (ORCID: https://orcid.org/0000-0003-3683-6208)
- Leah W. Roberts (ORCID: https://orcid.org/0000-0002-1024-0564)
- T. E. Kidd (ORCID: https://orcid.org/0000-0002-0819-9400)
- Ryan R. Wick (ORCID: https://orcid.org/0000-0001-8349-0778)
- Yiyang Xue
- Patrick N. A. Harris
- Ella Herring
- Tricia S.E Lee
Institutions
- Queensland Health (AU)
- The University of Queensland (AU)
- Royal Brisbane and Women's Hospital (AU)
- Princess Alexandra Hospital (AU)
- Metro South Health (AU)
- Peter Doherty Institute (AU)
- Melbourne Genomics Health Alliance (AU)
Publication Details
- Journal
- medRxiv
- Published
- 2026-03-04
- DOI
- https://doi.org/10.64898/2026.03.04.26347163
- Primary Topic
- Antimicrobial Resistance in Staphylococcus
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- University of Queensland
- Medical Research Council
- National Health and Medical Research Council
- Research Computing Centre, University of Queensland