Novel transposon Tn <i>8026</i> acts as a global driver of transmissible linezolid resistance in <i>Enterococcus</i> via a linear plasmid

Linezolid is a critical last-resort antimicrobial for multidrug-resistant <i>Enterococcus faecium</i> , particularly against vancomycin-resistant lineages where therapeutic options are severely limited. While resistance has historically arisen through <i>de novo</i> chromosomal mutations, the global emergence of transferable resistance mechanisms threatens to render more infections untreatable. Here, we characterise a recent (2023-2024) hospital-associated outbreak of linezolid-resistant <i>E. faecium</i> in Queensland, Australia. Although the cohort comprised a variety of sequence types, the outbreak was primarily driven by the clonal expansion of an ST80 lineage carrying the plasmid-borne <i>poxtA-Ef</i> gene. Standard short-read genomic surveillance failed to resolve the genetic context of the resistance determinant. However, long-read sequencing revealed that <i>poxtA-Ef</i> was carried within a novel transposon, Tn <i>8026</i> , situated on a linear plasmid. Structural analysis defined Tn <i>8026</i> as a unique element flanked by IS <i>1678</i> and the novel insertion sequence IS <i>Efa26</i> . Furthermore, we identified an instance of Tn <i>8026</i> integration into the chromosome, providing functional evidence of its mobility and capacity for stabilisation within the genome. Global genomic screening demonstrated that Tn <i>8026</i> significantly predates the local outbreak, identified in a historical Norwegian isolate from 2012, indicating a long-standing yet unrecognised global reservoir. Phylogenomic analysis provided strong evidence that the linear plasmid was imported from the Indian subcontinent, initiating a chain of silent dissemination in eastern Australia where the lineage circulated undetected prior to clinical recognition. Crucially, we also confirmed the presence of the linear plasmid in <i>Enterococcus gallinarum</i> , demonstrating its capacity to mobilise transmissible linezolid resistance across enterococcal species boundaries. These findings emphasise the need for detailed long-read-based surveillance of mobile genetic elements, with a particular focus on identifying linear plasmids that are often overlooked.

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Journal
medRxiv
Published
2026-03-04
DOI
https://doi.org/10.64898/2026.03.04.26347163
Primary Topic
Antimicrobial Resistance in Staphylococcus
Type
article
Field-Weighted Citation Impact
0.00

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article

Novel transposon Tn 8026 acts as a global driver of transmissible linezolid resistance in Enterococcus via a linear plasmid

Naomi Runnegar, Bianca Graves, Jocelyn Hume, Michael B. Hall et al.
medRxiv
Antimicrobial Resistance in Staphylococcus
article

Novel transposon Tn 8026 acts as a global driver of transmissible linezolid resistance in Enterococcus via a linear plasmid

Naomi Runnegar, Bianca Graves, Jocelyn Hume, Michael B. Hall, Leah W. Roberts, T. E. Kidd, Ryan R. Wick, Yiyang Xue, Patrick N. A. Harris, Ella Herring, Tricia S.E Lee
article en

Abstract

Linezolid is a critical last-resort antimicrobial for multidrug-resistant <i>Enterococcus faecium</i> , particularly against vancomycin-resistant lineages where therapeutic options are severely limited. While resistance has historically arisen through <i>de novo</i> chromosomal mutations, the global emergence of transferable resistance mechanisms threatens to render more infections untreatable. Here, we characterise a recent (2023-2024) hospital-associated outbreak of linezolid-resistant <i>E. faecium</i> in Queensland, Australia. Although the cohort comprised a variety of sequence types, the outbreak was primarily driven by the clonal expansion of an ST80 lineage carrying the plasmid-borne <i>poxtA-Ef</i> gene. Standard short-read genomic surveillance failed to resolve the genetic context of the resistance determinant. However, long-read sequencing revealed that <i>poxtA-Ef</i> was carried within a novel transposon, Tn <i>8026</i> , situated on a linear plasmid. Structural analysis defined Tn <i>8026</i> as a unique element flanked by IS <i>1678</i> and the novel insertion sequence IS <i>Efa26</i> . Furthermore, we identified an instance of Tn <i>8026</i> integration into the chromosome, providing functional evidence of its mobility and capacity for stabilisation within the genome. Global genomic screening demonstrated that Tn <i>8026</i> significantly predates the local outbreak, identified in a historical Norwegian isolate from 2012, indicating a long-standing yet unrecognised global reservoir. Phylogenomic analysis provided strong evidence that the linear plasmid was imported from the Indian subcontinent, initiating a chain of silent dissemination in eastern Australia where the lineage circulated undetected prior to clinical recognition. Crucially, we also confirmed the presence of the linear plasmid in <i>Enterococcus gallinarum</i> , demonstrating its capacity to mobilise transmissible linezolid resistance across enterococcal species boundaries. These findings emphasise the need for detailed long-read-based surveillance of mobile genetic elements, with a particular focus on identifying linear plasmids that are often overlooked.

medRxiv
Queensland Health (AU), The University of Queensland (AU), Royal Brisbane and Women's Hospital (AU), Princess Alexandra Hospital (AU), Metro South Health (AU), Peter Doherty Institute (AU), Melbourne Genomics Health Alliance (AU)
University of Queensland, Medical Research Council, National Health and Medical Research Council, Research Computing Centre, University of Queensland
Good health and well-being
Openalex Percentile: Top 35%
Antimicrobial Resistance in Staphylococcus
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