<i>MetaStrainer</i> : Accurate reconstruction of bacterial strain genotypes from short-read metagenomic samples

MetaStrainer is implemented in Python 3. Source code and instructions are available on GitHub at https://www.github.com/lbobay/MetaStrainer and on Zenodo: https://doi.org/10.5281/zenodo.17872331.

Authors

Hazem Sharaf (ORCID: https://orcid.org/0000-0002-6728-1631)
Louis‐Marie Bobay (ORCID: https://orcid.org/0000-0002-0438-545X)

Institutions

North Carolina State University (US)

Publication Details

Journal: bioRxiv (Cold Spring Harbor Laboratory)
Published: 2026-03-03
DOI: https://doi.org/10.64898/2026.03.02.709061
Primary Topic: Genomics and Phylogenetic Studies
Type: article
Field-Weighted Citation Impact: 0.00

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article

MetaStrainer : Accurate reconstruction of bacterial strain genotypes from short-read metagenomic samples

Hazem Sharaf, Louis‐Marie Bobay

Mar 3, 2026

bioRxiv (Cold Spring Harbor Laboratory)

Genomics and Phylogenetic Studies

article

MetaStrainer : Accurate reconstruction of bacterial strain genotypes from short-read metagenomic samples

Hazem Sharaf, Louis‐Marie Bobay

March 3, 2026article en

Abstract

MetaStrainer is implemented in Python 3. Source code and instructions are available on GitHub at https://www.github.com/lbobay/MetaStrainer and on Zenodo: https://doi.org/10.5281/zenodo.17872331.

bioRxiv (Cold Spring Harbor Laboratory)

North Carolina State University (US)

Openalex Percentile: Top 34%

Genomics and Phylogenetic Studies

DOI Open Access PDF OpenAlex

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<i>MetaStrainer</i> : Accurate reconstruction of bacterial strain genotypes from short-read metagenomic samples — Hazem Sharaf, Louis‐Marie Bobay · bioRxiv (Cold Spring Harbor Laboratory) (2026) | TGRS Research Map | TGRS