Further dissection of Gardnerella vaginalis: description of Gardnerella lacydonensis sp. nov. (formerly genomic species 2), Gardnerella bretellae sp. nov. (formerly genomic species 9), Gardnerella massiliensis sp. nov. (formerly genomic species 14) a

Four bacterial strains - Marseille-Q9181<sup>T</sup>, Marseille-QA0894<sup>T</sup>, Marseille-Q9179<sup>T</sup> and Marseille-Q2328<sup>T</sup> - were isolated, the first three from vaginal samples and the last from a blood sample. MALDI-TOF MS analysis failed to assign these isolates to any known species within the genus <i>Gardnerella</i>. Consequently, phenotypic and taxonogenomic characterizations were conducted. All four strains were Gram-negative, non-motile and non-spore-forming coccobacilli. Strains Marseille-Q9181<sup>T</sup>, Marseille-Q2328<sup>T</sup> and Marseille-Q9179<sup>T</sup> were facultative anaerobes with microaerophilic capabilities, whereas Marseille-QA0894<sup>T</sup> was strictly anaerobic and microaerophilic. The dominant fatty acids (>10%) identified in strains Marseille-Q9181<sup>T</sup>, Marseille-QA0894<sup>T</sup> and Marseille-Q2328<sup>T</sup> were C<sub>16 : 0</sub>, C<sub>18 : 1</sub> ω9c and C<sub>18 : 0</sub>. In strain Marseille-Q9179<sup>T</sup>, C<sub>18 : 0</sub> was also among the most abundant fatty acids, along with the aforementioned three. Digital DNA-DNA hybridization (dDDH) values for strains Marseille-Q9181<sup>T</sup>, Marseille-QA0894<sup>T</sup> and Marseille-Q2328<sup>T</sup> against <i>Gardnerella vaginalis</i> 1400E (genomic species 2), <i>G. vaginalis</i> 6119V5 (genomic species 9) and <i>G. vaginalis</i> NR010 (genomic species 14) were 72.1%, 72.4% and 75.5%, respectively. The corresponding OrthoANI values were 96.99%, 97.16% and 97.66%, all above the species demarcation threshold. In contrast, strain Marseille-Q9179<sup>T</sup> exhibited both dDDH and OrthoANI values below the accepted thresholds (70% and 95-96%, respectively), suggesting that it represents a novel genomic lineage. Based on comprehensive phenotypic and genomic analyses, we propose that these strains represent four new species within the genus <i>Gardnerella</i>, for which the following names are proposed: <i>Gardnerella lacydonensis</i> sp. nov. (type strain: Marseille-Q9181<sup>T</sup>=CSUR Q9181<sup>T</sup>=CECT 31121<sup>T</sup>), <i>Gardnerella bretellae</i> sp. nov. (type strain: Marseille-QA0894<sup>T</sup>=CSUR QA0894<sup>T</sup>=CECT 31122<sup>T</sup>), <i>Gardnerella massiliensis</i> sp. nov. (type strain: Marseille-Q2328<sup>T</sup>=CSUR Q2328<sup>T</sup>=CECT 30239<sup>T</sup>) and <i>Gardnerella phocaeensis</i> sp. nov. (type strain: Marseille-Q9179<sup>T</sup>=CSUR Q9179<sup>T</sup>=CECT 31120<sup>T</sup>).

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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2026-03-04
DOI
https://doi.org/10.1099/ijsem.0.007028
Primary Topic
Reproductive tract infections research
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article
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article

Further dissection of Gardnerella vaginalis: description of Gardnerella lacydonensis sp. nov. (formerly genomic species 2), Gardnerella bretellae sp. nov. (formerly genomic species 9), Gardnerella massiliensis sp. nov. (formerly genomic species 14) a

Oleg Mediannikov, Alissa Hammoud, Anthony Levasseur, Sara Bellali et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Reproductive tract infections research
article

Further dissection of Gardnerella vaginalis: description of Gardnerella lacydonensis sp. nov. (formerly genomic species 2), Gardnerella bretellae sp. nov. (formerly genomic species 9), Gardnerella massiliensis sp. nov. (formerly genomic species 14) a

Oleg Mediannikov, Alissa Hammoud, Anthony Levasseur, Sara Bellali, Nicolas Orain, Stéphane Alibar, Claudia Andrieu, Mamadou Beye, Priscille Allini Ntiguemassa, Florence Fenollar, Grégory Dubourg
article en

Abstract

Four bacterial strains - Marseille-Q9181<sup>T</sup>, Marseille-QA0894<sup>T</sup>, Marseille-Q9179<sup>T</sup> and Marseille-Q2328<sup>T</sup> - were isolated, the first three from vaginal samples and the last from a blood sample. MALDI-TOF MS analysis failed to assign these isolates to any known species within the genus <i>Gardnerella</i>. Consequently, phenotypic and taxonogenomic characterizations were conducted. All four strains were Gram-negative, non-motile and non-spore-forming coccobacilli. Strains Marseille-Q9181<sup>T</sup>, Marseille-Q2328<sup>T</sup> and Marseille-Q9179<sup>T</sup> were facultative anaerobes with microaerophilic capabilities, whereas Marseille-QA0894<sup>T</sup> was strictly anaerobic and microaerophilic. The dominant fatty acids (>10%) identified in strains Marseille-Q9181<sup>T</sup>, Marseille-QA0894<sup>T</sup> and Marseille-Q2328<sup>T</sup> were C<sub>16 : 0</sub>, C<sub>18 : 1</sub> ω9c and C<sub>18 : 0</sub>. In strain Marseille-Q9179<sup>T</sup>, C<sub>18 : 0</sub> was also among the most abundant fatty acids, along with the aforementioned three. Digital DNA-DNA hybridization (dDDH) values for strains Marseille-Q9181<sup>T</sup>, Marseille-QA0894<sup>T</sup> and Marseille-Q2328<sup>T</sup> against <i>Gardnerella vaginalis</i> 1400E (genomic species 2), <i>G. vaginalis</i> 6119V5 (genomic species 9) and <i>G. vaginalis</i> NR010 (genomic species 14) were 72.1%, 72.4% and 75.5%, respectively. The corresponding OrthoANI values were 96.99%, 97.16% and 97.66%, all above the species demarcation threshold. In contrast, strain Marseille-Q9179<sup>T</sup> exhibited both dDDH and OrthoANI values below the accepted thresholds (70% and 95-96%, respectively), suggesting that it represents a novel genomic lineage. Based on comprehensive phenotypic and genomic analyses, we propose that these strains represent four new species within the genus <i>Gardnerella</i>, for which the following names are proposed: <i>Gardnerella lacydonensis</i> sp. nov. (type strain: Marseille-Q9181<sup>T</sup>=CSUR Q9181<sup>T</sup>=CECT 31121<sup>T</sup>), <i>Gardnerella bretellae</i> sp. nov. (type strain: Marseille-QA0894<sup>T</sup>=CSUR QA0894<sup>T</sup>=CECT 31122<sup>T</sup>), <i>Gardnerella massiliensis</i> sp. nov. (type strain: Marseille-Q2328<sup>T</sup>=CSUR Q2328<sup>T</sup>=CECT 30239<sup>T</sup>) and <i>Gardnerella phocaeensis</i> sp. nov. (type strain: Marseille-Q9179<sup>T</sup>=CSUR Q9179<sup>T</sup>=CECT 31120<sup>T</sup>).

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 76(3)
Aix-Marseille Université (FR), Méditerranée Infection Foundation (FR), Assistance Publique Hôpitaux de Marseille (FR), Institut de Recherche pour le Développement (FR)
Openalex Percentile: Top 35%
Reproductive tract infections research
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