Building an Integrated Scientific Knowledge Graph for Neuroscience: Enhancing Research Impact Analysis and Optimizing Data Curation

The Neuroscience pilot of the EU-funded SciLake project seeks to tackle the complexities of fragmented and disorganized open research data. This initiative has united partners with expertise in knowledge management with curators from EBRAINS (RRID: SCR_019260), an open research infrastructure focused on brain-related studies. The innovative Scientific Knowledge Graph (SKG) (https://bip.imsi.athenarc.gr/search/neuroscience-pilot) created through this pilot serves as a cohesive framework for data integration while enabling the use of value-added services provided by SciLake. The developed SKG combines curated datasets from EBRAINS with extensive neuroscience research products from the OpenAIRE neuroscience gateway (https://neuroscience.openaire.eu/). The SKG incorporates controlled terms from openMINDS (RRID: SCR_023173) as nodes and utilizes an entity recognition model to classify and map these terms in relevant texts, enriching the connections among research products. Additionally, the SciLake services deploy language models to extract mentions of research artifacts (RAs) and enhance the interlinking of research products. Fully integrated with impact-driven discovery and reproducibility tools and leveraging the analytical capabilities of SciLake, the SKG serves as a powerful resource for contextualizing curation efforts and exploring research trends, ultimately optimizing curation processes in the neuroscientific landscape.

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Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-02-17
DOI
https://doi.org/10.5281/zenodo.18864402
Primary Topic
Biomedical Text Mining and Ontologies
Type
article
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article

Building an Integrated Scientific Knowledge Graph for Neuroscience: Enhancing Research Impact Analysis and Optimizing Data Curation

Serafeim Chatzopoulos, Trygve B. Leergaard, Sotiris Kotitsas, Nicolau Durán-Silva et al.
Zenodo (CERN European Organization for Nuclear Research)
Biomedical Text Mining and Ontologies
article

Building an Integrated Scientific Knowledge Graph for Neuroscience: Enhancing Research Impact Analysis and Optimizing Data Curation

Serafeim Chatzopoulos, Trygve B. Leergaard, Sotiris Kotitsas, Nicolau Durán-Silva, Archana Golla, Ingrid Reiten, Pablo Accuosto, Maya Kobchenko, Nikolay Yakovets, D. de Graaf, Sophia Pieschnik, César Parra Rojas, Miriam Baglioni, Jan G. Bjaalie, Thanasis Vergoulis, Petros Stavropoulos
article en

Abstract

The Neuroscience pilot of the EU-funded SciLake project seeks to tackle the complexities of fragmented and disorganized open research data. This initiative has united partners with expertise in knowledge management with curators from EBRAINS (RRID: SCR_019260), an open research infrastructure focused on brain-related studies. The innovative Scientific Knowledge Graph (SKG) (https://bip.imsi.athenarc.gr/search/neuroscience-pilot) created through this pilot serves as a cohesive framework for data integration while enabling the use of value-added services provided by SciLake. The developed SKG combines curated datasets from EBRAINS with extensive neuroscience research products from the OpenAIRE neuroscience gateway (https://neuroscience.openaire.eu/). The SKG incorporates controlled terms from openMINDS (RRID: SCR_023173) as nodes and utilizes an entity recognition model to classify and map these terms in relevant texts, enriching the connections among research products. Additionally, the SciLake services deploy language models to extract mentions of research artifacts (RAs) and enhance the interlinking of research products. Fully integrated with impact-driven discovery and reproducibility tools and leveraging the analytical capabilities of SciLake, the SKG serves as a powerful resource for contextualizing curation efforts and exploring research trends, ultimately optimizing curation processes in the neuroscientific landscape.

Zenodo (CERN European Organization for Nuclear Research)
Istituto di Scienza e Tecnologie dell'Informazione "Alessandro Faedo" (IT), Universitat Pompeu Fabra (ES), University of Oslo (NO), Institute for Language and Speech Processing (GR), Athena Research and Innovation Center In Information Communication & Knowledge Technologies (GR), SIRIS Academic, Eindhoven University of Technology (NL)
Industry, innovation and infrastructure
Openalex Percentile: Top 35%
Biomedical Text Mining and Ontologies
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