Multi-guild microbial cooperation sustains long-term anaerobic toluene degradation through sulfur cycling

Anaerobic degradation of aromatic hydrocarbons such as toluene plays a critical role in the natural and engineered attenuation of contaminated environments. Here, we developed and characterized a microbial consortium enriched under strictly anoxic conditions, capable of sustained toluene degradation through sulfate reduction. By integrating biodegradation kinetics, long-read 16S rRNA profiling, and genome-resolved metagenomics, we elucidated the structure and function of a multi-guild community. The consortium was co-dominated by <i>Desulfoprunum</i>, a sulfate-reducing bacterium (SRB), and <i>Sulfurovum</i>-affiliated sulfur oxidizers (~34% each), with additional members including <i>Stenotrophomonas, Achromobacter</i>, and <i>Stutzerimonas</i>. Such co-dominance appears uncommon, as sulfate-reducing enrichments are often characterized by low diversity and the predominance of a single lineage, such as <i>Desulfobacula</i> or <i>Desulfosarcina</i> in marine systems. Genome-resolved analyses recovered seven metagenome-assembled genomes (MAGs) with distinct but complementary metabolic roles. <i>Desulfoprunum</i> encoded the fumarate-addition pathway (<i>bss/bbs</i>) for anaerobic toluene activation and dissimilatory sulfate reduction (<i>aprAB, dsrAB</i>). In contrast, <i>Sulfurovum</i> and several <i>Gammaproteobacteria</i> encoded sulfide:quinone oxidoreductase (<i>sqr</i>), coupling H<sub>2</sub>S detoxification to energy conservation, while a <i>Moranbacterales</i> MAG carried a putative sulfhydrogenase (<i>hydAB</i>) potentially catalyzing elemental sulfur (S°) reduction. Additional MAGs encoded assimilatory sulfate reduction (<i>cys</i>), suggesting integration of sulfur into biosynthetic pathways. Together, these features are consistent with the presence of a putative distributed sulfur redox loop, in which biogenic H<sub>2</sub>S may be recycled via oxidation and reduction reactions mediated by co-occurring taxa. This sulfur loop is hypothesized to contribute to buffering sulfide toxicity and stabilize redox dynamics, thereby potentially supporting long-term toluene degradation under sulfidic conditions. Our findings highlight anaerobic degradation as a community-driven process enabled by sulfur-cycling interactions. By revealing the role of cryptic sulfur cycling in stabilizing hydrocarbon degradation, this work offers a new framework for designing bioremediation strategies in contaminated anoxic environments.

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Journal
Frontiers in Microbiology
Published
2026-03-03
DOI
https://doi.org/10.3389/fmicb.2026.1773863
Primary Topic
Microbial bioremediation and biosurfactants
Type
article
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article

Multi-guild microbial cooperation sustains long-term anaerobic toluene degradation through sulfur cycling

Verónica Peña-Álvarez, Matteo Tucci, Marco Resitano, Bruna Matturro et al.
Frontiers in Microbiology
Microbial bioremediation and biosurfactants
article

Multi-guild microbial cooperation sustains long-term anaerobic toluene degradation through sulfur cycling

Verónica Peña-Álvarez, Matteo Tucci, Marco Resitano, Bruna Matturro, Maurizio Petruccioli, Carolina Cruz Viggi, Federico Aulenta, Martina Trinchillo, Luca Niccolini, Simona Rossetti, Ana Isabel Peláez, Andrea Firrincieli
article en

Abstract

Anaerobic degradation of aromatic hydrocarbons such as toluene plays a critical role in the natural and engineered attenuation of contaminated environments. Here, we developed and characterized a microbial consortium enriched under strictly anoxic conditions, capable of sustained toluene degradation through sulfate reduction. By integrating biodegradation kinetics, long-read 16S rRNA profiling, and genome-resolved metagenomics, we elucidated the structure and function of a multi-guild community. The consortium was co-dominated by <i>Desulfoprunum</i>, a sulfate-reducing bacterium (SRB), and <i>Sulfurovum</i>-affiliated sulfur oxidizers (~34% each), with additional members including <i>Stenotrophomonas, Achromobacter</i>, and <i>Stutzerimonas</i>. Such co-dominance appears uncommon, as sulfate-reducing enrichments are often characterized by low diversity and the predominance of a single lineage, such as <i>Desulfobacula</i> or <i>Desulfosarcina</i> in marine systems. Genome-resolved analyses recovered seven metagenome-assembled genomes (MAGs) with distinct but complementary metabolic roles. <i>Desulfoprunum</i> encoded the fumarate-addition pathway (<i>bss/bbs</i>) for anaerobic toluene activation and dissimilatory sulfate reduction (<i>aprAB, dsrAB</i>). In contrast, <i>Sulfurovum</i> and several <i>Gammaproteobacteria</i> encoded sulfide:quinone oxidoreductase (<i>sqr</i>), coupling H<sub>2</sub>S detoxification to energy conservation, while a <i>Moranbacterales</i> MAG carried a putative sulfhydrogenase (<i>hydAB</i>) potentially catalyzing elemental sulfur (S°) reduction. Additional MAGs encoded assimilatory sulfate reduction (<i>cys</i>), suggesting integration of sulfur into biosynthetic pathways. Together, these features are consistent with the presence of a putative distributed sulfur redox loop, in which biogenic H<sub>2</sub>S may be recycled via oxidation and reduction reactions mediated by co-occurring taxa. This sulfur loop is hypothesized to contribute to buffering sulfide toxicity and stabilize redox dynamics, thereby potentially supporting long-term toluene degradation under sulfidic conditions. Our findings highlight anaerobic degradation as a community-driven process enabled by sulfur-cycling interactions. By revealing the role of cryptic sulfur cycling in stabilizing hydrocarbon degradation, this work offers a new framework for designing bioremediation strategies in contaminated anoxic environments.

Frontiers in MicrobiologyVol. 17
Università degli Studi della Tuscia (IT), Universidad de Oviedo (ES), National Academies of Sciences, Engineering, and Medicine (US), National Biodiversity Institute (CR)
European Commission
Openalex Percentile: Top 39%
Microbial bioremediation and biosurfactants
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