Mechanistic Aspects of Thioester Formation by Binuclear Nickel(II)-thiolate as a Functional Model of the Ni <sub>p</sub> Site of Acetyl-CoA Synthase

To understand the structure function of the Ni<sub>p</sub> site of acetyl-CoA synthase (ACS), four nickel(II)-thiolates [Ni<sup>II</sup>(L<sup>p-ClPh(BzS)</sup>)<sub>2</sub>] (<b>1</b>), [Ni<sup>II</sup>(L<sup>p-ClPh(BzS)</sup>)<sub>2</sub>Ni<sup>II</sup>(dppe)](ClO<sub>4</sub>/BPh<sub>4</sub>)<sub>2</sub> (<b>2/2'</b>), [Ni<sup>II</sup>(L<sup>p-ClPh(BzS)</sup>)<sub>2</sub>Ni<sup>I</sup>(dppe)](ClO<sub>4</sub>) (<b>2</b><sup><b>red1</b></sup>), and [Ni<sup>II</sup>(L<sup>p-ClPh(BzS)</sup>)<sub>2</sub>Ni<sup>I</sup>(dppe)(CO)<sub>2</sub>](ClO<sub>4</sub>), (<b>2</b><sup><b>red1</b></sup>-(CO)<sub>2</sub>) are synthesized and characterized, where HL<sup>p-ClPh(BzS)</sup>/dppe is an N<sub>2</sub>S<sup>thiol</sup>/P<sub>2</sub> donor ligand. Model <b>2/2'</b> has a square planar Ni<sup>II</sup>P<sub>2</sub>(μ-S)<sub>2</sub> moiety and partially resembles the square planar [{(μ-S<sup>cys</sup>)<sub>3</sub>X}Ni<sup>II</sup>] module, i.e., the Ni<sub>p</sub> site of ACS. Electrochemistry and DFT calculations reveal that <b>2</b> is stable in its 1e<sup>-</sup> (<b>2</b><sup><b>red1</b></sup>), 2e<sup>-</sup> (<b>2</b><sup><b>red2</b></sup>), and 3e<sup>-</sup> (<b>2</b><sup><b>red3</b></sup>) reduced forms, exhibiting no thiol-S detachment of the model site. <b>2</b><sup><b>red1</b></sup> and <b>2</b><sup><b>red2</b></sup> as models enable to examine their thioester formation ability, relevant to the CoA-Ac synthesis by 1e<sup>-</sup> and 2e<sup>-</sup> reduced A-clusters, as proposed in paramagnetic and diamagnetic mechanisms of ACS catalysis, respectively, which are debatable. Reactions of <b>2</b><sup><b>red1</b></sup> separately with CO, CH<sub>3</sub>I, (CH<sub>3</sub>I + CO), and (CH<sub>3</sub>I + CO + Ph<sub>3</sub>CSNa) are examined, and various intermediates/products formed are characterized by means of spectroelectrochemistry and various spectroscopy that reveal acetyl synthesis and deconstruction at the NiP<sub>2</sub>S<sub>2</sub> site, as well as thioester (Ph<sub>3</sub>C-SC(O)CH<sub>3</sub>) formation along with <b>2</b><sup><b>red2</b></sup>. <b>2</b><sup><b>red2</b></sup> binds CO to form <b>2</b><sup><b>red2</b></sup>-(CO)<sub>2</sub> but is unable to produce thioester. Combined experimental and theoretical results that give clue to the ability/inability of thioester formation by <b>2</b><sup><b>red1</b></sup>/<b>2</b><sup><b>red2</b></sup> are described in this paper.

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Journal
Inorganic Chemistry
Published
2026-03-03
DOI
https://doi.org/10.1021/acs.inorgchem.5c05351
Primary Topic
Metalloenzymes and iron-sulfur proteins
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article
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article

Mechanistic Aspects of Thioester Formation by Binuclear Nickel(II)-thiolate as a Functional Model of the Ni p Site of Acetyl-CoA Synthase

Apurba K. Patra, Anannya Saha, Shibaditya Kumar, A.K. Das et al.
Inorganic Chemistry
Metalloenzymes and iron-sulfur proteins
article

Mechanistic Aspects of Thioester Formation by Binuclear Nickel(II)-thiolate as a Functional Model of the Ni p Site of Acetyl-CoA Synthase

Apurba K. Patra, Anannya Saha, Shibaditya Kumar, A.K. Das, Suman K. Barman, Kuldeep Mahiya
article en

Abstract

To understand the structure function of the Ni<sub>p</sub> site of acetyl-CoA synthase (ACS), four nickel(II)-thiolates [Ni<sup>II</sup>(L<sup>p-ClPh(BzS)</sup>)<sub>2</sub>] (<b>1</b>), [Ni<sup>II</sup>(L<sup>p-ClPh(BzS)</sup>)<sub>2</sub>Ni<sup>II</sup>(dppe)](ClO<sub>4</sub>/BPh<sub>4</sub>)<sub>2</sub> (<b>2/2'</b>), [Ni<sup>II</sup>(L<sup>p-ClPh(BzS)</sup>)<sub>2</sub>Ni<sup>I</sup>(dppe)](ClO<sub>4</sub>) (<b>2</b><sup><b>red1</b></sup>), and [Ni<sup>II</sup>(L<sup>p-ClPh(BzS)</sup>)<sub>2</sub>Ni<sup>I</sup>(dppe)(CO)<sub>2</sub>](ClO<sub>4</sub>), (<b>2</b><sup><b>red1</b></sup>-(CO)<sub>2</sub>) are synthesized and characterized, where HL<sup>p-ClPh(BzS)</sup>/dppe is an N<sub>2</sub>S<sup>thiol</sup>/P<sub>2</sub> donor ligand. Model <b>2/2'</b> has a square planar Ni<sup>II</sup>P<sub>2</sub>(μ-S)<sub>2</sub> moiety and partially resembles the square planar [{(μ-S<sup>cys</sup>)<sub>3</sub>X}Ni<sup>II</sup>] module, i.e., the Ni<sub>p</sub> site of ACS. Electrochemistry and DFT calculations reveal that <b>2</b> is stable in its 1e<sup>-</sup> (<b>2</b><sup><b>red1</b></sup>), 2e<sup>-</sup> (<b>2</b><sup><b>red2</b></sup>), and 3e<sup>-</sup> (<b>2</b><sup><b>red3</b></sup>) reduced forms, exhibiting no thiol-S detachment of the model site. <b>2</b><sup><b>red1</b></sup> and <b>2</b><sup><b>red2</b></sup> as models enable to examine their thioester formation ability, relevant to the CoA-Ac synthesis by 1e<sup>-</sup> and 2e<sup>-</sup> reduced A-clusters, as proposed in paramagnetic and diamagnetic mechanisms of ACS catalysis, respectively, which are debatable. Reactions of <b>2</b><sup><b>red1</b></sup> separately with CO, CH<sub>3</sub>I, (CH<sub>3</sub>I + CO), and (CH<sub>3</sub>I + CO + Ph<sub>3</sub>CSNa) are examined, and various intermediates/products formed are characterized by means of spectroelectrochemistry and various spectroscopy that reveal acetyl synthesis and deconstruction at the NiP<sub>2</sub>S<sub>2</sub> site, as well as thioester (Ph<sub>3</sub>C-SC(O)CH<sub>3</sub>) formation along with <b>2</b><sup><b>red2</b></sup>. <b>2</b><sup><b>red2</b></sup> binds CO to form <b>2</b><sup><b>red2</b></sup>-(CO)<sub>2</sub> but is unable to produce thioester. Combined experimental and theoretical results that give clue to the ability/inability of thioester formation by <b>2</b><sup><b>red1</b></sup>/<b>2</b><sup><b>red2</b></sup> are described in this paper.

Inorganic ChemistryVol. 65(10)
National Institute of Technology Durgapur (IN), Indian Institute of Science Education and Research Mohali (IN), Government College of Science (PK)
Openalex Percentile: Top 40%
Metalloenzymes and iron-sulfur proteins
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