Genomic and functional characterization of a lytic Klebsiella phage UHKP with antibiofilm activity

<i>Klebsiella pneumoniae</i> is an opportunistic pathogen causing severe hospital-acquired infections, and it rapidly acquires multidrug resistance. Its robust biofilm formation further complicates treatment and drives interest in phage therapy. A phage UHKP was isolated from hospital sewage using an MDR <i>K. pneumoniae</i> strain (<i>KP-</i>03). UHKP formed clear plaques and having phage titer 2.3 × 10<sup>9</sup> PFU/mL. Host-range testing on 19 clinical isolates showed a narrow spectrum. Only four MDR strains (<i>KP-</i>03, <i>KP-</i>05, <i>KP-</i>08, <i>KP-</i>11) and one K-17 serotype were lysed, with no activity on other strains or species. One-step growth analysis yielded a 30 min latent period and 85 PFU burst size. In planktonic culture, UHKP at MOI 1 stopped bacterial growth by 4 h and cleared cultures by 8 h, whereas at MOI 0.1 killing was delayed and incomplete. In static biofilm assays, UHKP eradicated 98% of 24-h and 96% of 48-h biofilm biomass by 24 h (MOI 1). Clearance of 72 - 96 h biofilms was limited (≤ 87% by 24 h). UHKP possesses an icosahedral head of 56 ± 3 nm and a short, non-contractile tail measuring around 15 ± 2 nm. Genome sequencing revealed a 62,542 bp dsDNA genome (56.6% GC) encoding 77 ORFs, and phylogenetic analysis placed UHKP in the genus <i>Lastavirus</i>. UHKP carries no lysogeny, toxin or antibiotic-resistance genes.

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Journal
Frontiers in Microbiology
Published
2026-03-02
DOI
https://doi.org/10.3389/fmicb.2026.1775638
Primary Topic
Bacteriophages and microbial interactions
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article
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article

Genomic and functional characterization of a lytic Klebsiella phage UHKP with antibiofilm activity

Afshan Saleem, D. Maqsood Ahmed, Samiullah Khan, Alvi IA et al.
Frontiers in Microbiology
Bacteriophages and microbial interactions
article

Genomic and functional characterization of a lytic Klebsiella phage UHKP with antibiofilm activity

Afshan Saleem, D. Maqsood Ahmed, Samiullah Khan, Alvi IA, Muhammad Asif, Muhammad Hassan
article en

Abstract

<i>Klebsiella pneumoniae</i> is an opportunistic pathogen causing severe hospital-acquired infections, and it rapidly acquires multidrug resistance. Its robust biofilm formation further complicates treatment and drives interest in phage therapy. A phage UHKP was isolated from hospital sewage using an MDR <i>K. pneumoniae</i> strain (<i>KP-</i>03). UHKP formed clear plaques and having phage titer 2.3 × 10<sup>9</sup> PFU/mL. Host-range testing on 19 clinical isolates showed a narrow spectrum. Only four MDR strains (<i>KP-</i>03, <i>KP-</i>05, <i>KP-</i>08, <i>KP-</i>11) and one K-17 serotype were lysed, with no activity on other strains or species. One-step growth analysis yielded a 30 min latent period and 85 PFU burst size. In planktonic culture, UHKP at MOI 1 stopped bacterial growth by 4 h and cleared cultures by 8 h, whereas at MOI 0.1 killing was delayed and incomplete. In static biofilm assays, UHKP eradicated 98% of 24-h and 96% of 48-h biofilm biomass by 24 h (MOI 1). Clearance of 72 - 96 h biofilms was limited (≤ 87% by 24 h). UHKP possesses an icosahedral head of 56 ± 3 nm and a short, non-contractile tail measuring around 15 ± 2 nm. Genome sequencing revealed a 62,542 bp dsDNA genome (56.6% GC) encoding 77 ORFs, and phylogenetic analysis placed UHKP in the genus <i>Lastavirus</i>. UHKP carries no lysogeny, toxin or antibiotic-resistance genes.

Frontiers in MicrobiologyVol. 17
International Islamic University, Islamabad (PK), Hazara University (PK), University of Haripur (PK), Government College University, Lahore (PK)
Clean water and sanitation
Openalex Percentile: Top 45%
Bacteriophages and microbial interactions
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Genomic and functional characterization of a lytic Klebsiella phage UHKP with antibiofilm activity — Afshan Saleem, D. Maqsood Ahmed, et al. · Frontiers in Microbiology (2026) | TGRS Research Map | TGRS